Eukaryotic microbial community at the LTER site Helgoland Roads from March 2016 to March 2019

Description: Water samples were collected from the long-term ecological research (LTER) site at Helgoland and the eukaryotic microbial community was assessed. 18S V4 region was amplified using the primer set 528iF /964iR and amplicon sequencing was performed on an Illumina MiSeq™ sequencer in a 2 × 300 bp paired-end run. Sequence data have been deposited in the European Nucleotide Archive (ENA) at the European Bioinformatics Institute (EMBL-EBI) under accession number PRJEB37135 using the data brokerage service of the German Federation for Biological Data (GFBio). 21 million sequences remained after bioinformatic processing and were clustered into Operational Taxonomic Units (OTUs). The Protist Ribosomal Reference database (PR2), version 4.11.1 was used as reference database.

Global identifier:

Doi(
    "10.1594/PANGAEA.921026",
)

Measurements {
    domain: Unspecified,
    station: None,
    measured_variables: [
        "Binary Object",
    ],
    methods: [],
}

Dataset

Origins: /Wissenschaft/PANGAEA

Tags: Phytoplankton ? Zooplankton ? DNA-Barcoding ? Daten ? Wasserprobe ? Datenbank ? OTU ? eukaryotic plankton ? protists ?

Region: German Bight, North Sea

Bounding boxes: 7.9° .. 7.9° x 54.18833° .. 54.18833°

License: cc-by/4.0

Language: Englisch/English

Organisations

• PANGAEA (Herausgeber*in)

Persons

• Alexandra Claudia Kraberg (Beitragende*r) [1] [ORCID]
• Bernhard M Fuchs (Beitragende*r) [1] [ORCID]
• Karen Helen Wiltshire (Beitragende*r) [1] [ORCID]
• Laura Käse (Beitragende*r) [ORCID]
• Maarten Boersma (Beitragende*r) [1] [ORCID]
• Stefan Neuhaus (Beitragende*r) [ORCID]

Issued: 2020-07-30

Modified: 2024-04-20

Time ranges: 2020-07-30 - 2024-04-20

Resources

• https://doi.pangaea.de/10.1594/PANGAEA.921026?format=textfile (TSV)

Status

Aktiv

Quality score

• Overall: 0.93
• Findability: 0.73

  • Title: 0.64
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  • Identifier: true
  • Keywords: 0.67
  • Spatial: Point (0.75)
  • Temporal: true
• Accessibility: 1.00

  • Landing page: Specific (1.00)
  • Direct access: true
  • Publicly accessible: true
• Interoperability: 1.00

  • Open file format: true
  • Media type: true
  • Machine-readable metadata: true
  • Machine-readable data: true
• Reusability: 1.00

  • License: ClearlySpecifiedAndFree (1.00)
  • Contact info: true
  • Publisher info: true

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