Barley (Hordeum vulgare) is an important cereal grain which serves as major animal fodder crop as well as basis for malt beverages or staple food. Currently barley is ranked fourth in terms of quantity of cereal crops produced worldwide. In times of a constantly growing world population in conjunction with an unforeseeable climate change and groundwater depletion, the accumulation of knowledge concerning cereal growth and rate of yield gain is important. The Nordic Genetic Resource Center holds a major collection of barley mutants produced by irradiation or chemical treatment. One phenotypic group of barley varieties are dwarf mutants (erectoides, brachytic, semidwarf, uzu). They are characterized by a compact spike and high rate of yield while the straw is short and stiff, enhancing the lodging resistance of the plant. Obviously they are of applied interest, but they are also of scientific interest as virtually nothing is known about the genes behind the development of plant dwarfism. The aim of this project is to identify and isolate the genes carrying the mutations by using state of the art techniques for gene cloning at the Carlsberg Laboratory. The identified genes will be connected with the mutant phenotype to reveal the gene function in general. One or two genes will be overexpressed and the resulting recombinant proteins will be biochemically and structurally characterized. The insights how the mutation effects the protein will display the protein function in particular. Identified genes and their mutant alleles will be tested in the barley breeding program of the Carlsberg brewery.
The focus of this project is to analyse the observed surface freshwater fluxes through improved estimates of evaporation and precipitation and their individual error characteristics in the HOAPS climatology and its ground validation in climate-related hotspots of the Atlantic Ocean. To enable that in a consistent manner we propose to establish an error characterization of the HOAPS evaporation data by triple collocations with ship and buoy measurements and between individual satellites and to improve the error characterization of the HOAPS precipitation by analysing available shipboard disdrometer data using point to area statistics. After these improvements, an analysis of the spatio-temporal variability of the surface fresh water balance E-P over the Atlantic Ocean is planned, especially with respect to the Hadley circulation and the hotspot regions of interest to related WPs. Also the atmospheric water transport shall be analysed in order to find the source or target region of local fresh water imbalances. And finally, a consistent inter-comparison of the upcoming global ocean surface salinity fields from SMOS with freshwater fluxes from the HOAPS climatology is proposed.
This project is aimed at the characterization of the systemic reprogramming in barley, which modulates the compatible interaction with the biotrophic leaf pathogen Blumeria graminis f.sp. hordei upon root infestation with the mutualistic endophyte Piriformospora indica. We have recently shown that the basidiomycete P. indica - upon successful establishment in the roots - reprograms barley to salt stress tolerance, resistance to root diseases and higher yield (Waller et al., 2005). Successful powdery mildew infections in barley leaves are also disturbed by the mutualistic fungus. These processes are associated with a strong change in plant metabolism, especially with a drastic alteration of leaf and root antioxidants. On the basis of these findings we will perform an in-depth analysis of the barley metabolome (B6) and transcriptome (B7) with two specific foci: First, to elucidate the process of establishment of the mutualistic fungus within the barley roots; second, to characterize elements of the systemic response in leaves leading to an interruption or failure of compatibility processes required for successful establishment of biotrophic leaf pathogens like Blumeria. New gene candidates will be pre-selected systematically for their regulatory role in compatibility by means of transiently transformed barley leaves upon Blumeria inoculation. Stable transgenic barley and maize lines (B3) generated with verified gene candidates and genes identified by other projects (A1, A2, B5, B6) will be tested with Blumeria and P. indica. By comparing candidate genes in the different plant - microbe systems, we will identify common regulatory processes, metabolites and metabolic networks implicated in compatibility including those required for successful interactions with mutualistic fungi.
Passatwindkumuli spielen eine essentielle Rolle im Strahlungshaushalt der Erde und sind verantwortlich für bis zu 20 % des tropischen Niederschlags. Noch ist nicht bekannt, wie Passatwindkumuli auf die globale Erwärmung reagieren werden. Durch Niederschlag verändern sich Wolkeneigenschaften, aber auch die Grenzschichtstruktur und -dynamik. Aufgrund der Vielzahl der beteiligten Prozesse ist die Niederschlagsentwicklung in Modellen ist unsicher. Die Konfiguration der Simulationen und Wahl der Parameterisierung, wie das Autokonversionsschema, beeinflussen Niederschlagsfluss, Wolkenstruktur und â€Ìorganisation. Bisher konnten Vergleiche mit Beobachtungen noch nicht zur Reduktion der Unsicherheit des Autokonversionsschemas beitragen. Radarreflektivität, die mit Standardmethoden aus bodengebundenen Messungen abgeleitet wird, erkennt Niederschlag erst in einem fortgeschrittenen Stadium, was es schwierig macht, die verschiedenen, den Regen verursachenden Faktoren zu entflechten. Durch die Verdunstung des Niederschlags unterhalb der Wolkenunterkante (WUK) bestimmt dieser die Stärke der Coldpools und ist so bedeutend für die Organisation von Konvektion und somit die Klimasensitivität: Daher ist es essentiell Verdunstungsraten zu bestimmen und deren räumlich-zeitliche Variabilität zu verstehen. Zwar gibt es Parameterisierungen der Verdunstung unterhalb der WUK, allerdings sind diese von der Größe der Regentropfen abhängig, welche jedoch schlecht direkt zu beobachten ist.Ziel dieses Antrages ist die Bestimmung von Faktoren, welche die Niederschlagsformation in Passatwindkumuli beeinflussen. Dazu werden neuartige Radarbeobachtungen dieser Prozesse zur genaueren Beschreibung der Niederschlagsentwicklung in Grobstruktursimulationen (LES) herangezogen. Die räumlich-zeitliche Verdunstungsverteilung wird unterhalb der WUK in den Passatwindkumuli untersucht und treibende Faktoren identifiziert. Das Forschungsvorhaben ergänzt die bevorstehende EUREC4A (A Field Campaign to Elucidate the Couplings Between Clouds, Convection and Circulation) Kampagne und nutzt die langjährige Datenreihe des Barbados Cloud Observatory (BCO).Die synergetischen bodengebundenen Beobachtungen und der neue Ansatz, Niederschlag in Wolken mit Hilfe höherer Momente des Wolkenradardopplerspektrums zu bestimmen, werden erstmalig zur Beobachtungen von Passatwindkumuli und der Charakterisierung des Niederschlagslebenszyklus zu angewendet. Damit wird es möglich die Niederschlagsentwicklung in den hochauflösenden ICON-LEM und DHARMA-LES Modellen zu evaluieren. Für einen statistischen Vergleich der Simulationen und der Beobachtungen wird der Vorwärtsoperator PAMTRA verwendet, so dass im Beobachtungsraum untersucht werden kann, inwiefern die Modelle die beobachteten, mittleren Werte und Abhängigkeiten reproduzieren können und systematischen Fehler identifiziert werden. Damit trägt das Vorhaben zum Grand Challenge on Cloud Circulation and Climate Sensitivity des Weltklimaforschungsprogramm WRCP bei.
This subproject aims at the development of spectral electrical impedance tomography (EIT) as a non-destructive tool for the imaging, characterization and monitoring of root structure and function in the subsoil at the field scale. The approach takes advantage of the capacitive properties of the soil-root interface associated with induced electrical polarization processes at the root membrane. These give rise to a characteristic electrical signature (impedance spectrum), which is measurable in an imaging framework using EIT. In the first project phase, the methodology is developed by means of controlled rhizotron experiments in the laboratory. The goal is to establish quantitative relationships between characteristics of the measured impedance spectra and parameters describing root system morphology, root growth and activity in dependence on root type, soil type and structure (with/without biopores), as well as ambient conditions. Parallel to this work, sophisticated EIT inversion algorithms, which take the natural characteristics of root system architecture into account when solving the inherent inverse problem, will be developed and tested in numerical experiments. Thus the project will provide an understanding of electrical impedance spectra in terms of root structure and function, as well as specifically adapted EIT inversion algorithms for the imaging and monitoring of root dynamics. The method will be applied at the field scale (central field trial in Klein-Altendorf), where non-destructive tools for the imaging and monitoring of subsoil root dynamics are strongly desired, but at present still lacking.
The gross carbon uptake of terrestrial vegetation through photosynthesis is a crucial parameter in climate change research. A global, observation-based characterization of ecosystem gross primary production can only be performed with satellite measurements. However, the traditional description of vegetation from space is based on the so-called spectral vegetation indices, which are not able to provide a reliable indication of photosynthetic efficiency driving carbon assimilation by vegetation. This results in an inherent limitation of existing satellite products to provide an accurate description of ecosystem functioning. By contrast, ongoing developments in instrument design and modelling approaches have very recently made possible the retrieval of vegetation chlorophyll fluorescence from space measurements. A vast number of laboratory and field experiments have demonstrated that fluorescence is a direct proxy to vegetation light use efficiency which can therefore enable a much more accurate description of gross primary production. This project proposes the implementation of a research group with focus on the global monitoring and interpretation of chlorophyll fluorescence from existing and upcoming Earth Observation missions. This task will imply the development of a variety of atmospheric-surface radiative transfer modelling approaches, data processing, retrieval techniques and ecosystem modelling tools, with the ultimate objective of developing a new approach to the observation of carbon assimilation by vegetation from space.
In structured soils, the interaction of percolating water and reactive solutes with the soil matrix is mostly restricted to the surfaces of preferential flow paths. Flow paths, i.e., macropores, are formed by worm burrows, decayed root channels, cracks, and inter-aggregate spaces. While biopores are covered by earthworm casts and mucilage or by root residues, aggregates and cracks are often coated by soil organic matter (SOM), oxides, and clay minerals especially in the clay illuviation horizons of Luvisols. The SOM as well as the clay mineral composition and concentration strongly determine the wettability and sorption capacity of the coatings and thus control water and solute movement as well as the mass exchange between the preferential flow paths and the soil matrix. The objective of this proposal is the quantitative description of the small-scale distribution of physicochemical properties of intact structural surfaces and flow path surfaces and of their distribution in the soil volume. Samples of Bt horizons of Luvisols from Loess will be compared with those from glacial till. At intact structural surfaces prepared from soil clods, the spatial distribution (mm-scale) of SOM and clay mineral composition will be characterized with DRIFT (Diffuse reflectance infrared Fourier transform) spectroscopy using a self-developed mapping technique. For samples manually separated from coated surfaces and biopore walls, the contents of organic carbon (Corg) and the cation exchange capacity (CEC) will be analyzed and related to the intensities of specific signals in DRIFT spectra using Partial Least Square Regression (PLSR) analysis. The signal intensities of the DRIFT mapping spectra will be used to quantify the spatial distribution of Corg and CEC at these structural surfaces. The DRIFT mapping data will also be used for qualitatively characterizing the small scale distribution of the recalcitrance, humification, and microbial activity of the SOM from structural surfaces. The clay mineral composition of defined surface regions will be characterized by combining DRIFT spectroscopic with X-ray diffractometric analysis of manually separated samples. Subsequently, the spatial distribution of the clay mineral composition at structural surfaces will be determined from the intensities of clay mineral-specific signals in the DRIFT mapping spectra and exemplarily compared to scanning electron microscopic and infrared microscopic analysis of thin sections and thin polished micro-sections. The three-dimensional spatial distribution of the total structural surfaces in the volume of the Bt horizons will be quantified using X-ray computed tomography (CT) analysis of soil cores. The active preferential flow paths will be visualized and quantified by field tracer experiments. These CT and tracer data will be used to transfer the properties of the structural surfaces characterized by DRIFT mapping onto the active preferential flow paths in the Bt horizons.
We consider clay minerals, iron oxides and charcoal as major components controlling the formation of interfaces relevant for sorption of organic chemicals, as they control the assemblage of organic matter and mineral particles. We studied the formation of interfaces in batch incubation experiments with inoculated artificial soils consisting of model compounds (clay minerals, iron oxide, char) and natural soil samples. Results show a relevant contribution of both iron oxides and clay minerals to the formation of organic matter as sorptive interfaces for hydrophobic compounds. Thus, we intend to focus our work in the second phase on the characterization of the interface as formed by organic matter associated with clay minerals and iron oxides. The interfaces will be characterized by the BET-N2 and ethylene glycol monoethyl ether (EGME) methods and 129Xe and 13C NMR spectroscopy for determination of specific surface area, sorptive domains in the organic matter and microporosity. A major step forward is expected by the analysis of the composition of the interface at different resolution by reflected-light microscopy (mm scale), SEM (scanning electron microscopy, micrometer scale) and secondary ion mass spectrometry at the nanometer scale (nanoSIMS). The outcomes obtained in combination with findings from cooperation partners will help to unravel the contribution of different types of soil components on the formation and characteristics of the biogeochemical interfaces and their effect on organic chemical sorption.
In bog ecosystems, vegetation controls key processes such as the retention of carbon, water and nutrients. In northern hemispherical bogs, a shift from Sphagnum- to vascular plant-dominated vegetation is often traced back to Climate Change and increased anthropogenic nitrogen deposition and coincides with substantially reduced capacities in carbon, water and nutrient retention. In southern Patagonia, bogs dominated by Sphagnum and vascular plants coexist since millennia under similar environmental settings. Thus, South Patagonian bogs may serve as ideal examples for the long-term effect of vascular plant invasion on carbon, water and nutrient balances of bog ecosystems. The contemporary balances of carbon and water of both a bog dominated by Sphagnum and vascular plants are determined by CO2- H2O and CH4 flux measurements and an estimation of lateral water losses as well as losses via dissolved organic and inorganic carbon compounds. The high time resolution of simultaneous eddy covariance measurements of CO2 and H2O in both bog types and the strong interaction between climatic variables and the physiology of bog plants allow for direct comparisons of carbon and water fluxes during cold, warm, dry, wet, cloudy or sunny periods. By the combination with leaf-scale measurements of gas exchange and fluorescence, plant-physiological controls of photosynthesis and transpiration can be identified. Long-term peat accumulation rates will be determined by carbon density and age-depth profiles including a characterization of peat humification characteristics. A reciprocal transplantation experiment with incorporated shading, liming and labeled N addition treatments is conducted to explore driving factors affecting competition between Sphagnum and vascular plants as well as the interactions between CO2-, CH4-, and water fluxes and decisive plant functional traits affecting key processes for carbon sequestration and nutrient cycling. Decomposition rates and driving below ground processes are analyzed with a litter bag field experiment and an incubation experiment in the laboratory.
Boron (B) is an essential microelement for plants. Despite the use of modern fertilization methods, B deficiency still causes losses in agricultural plant production. Even though many positive effects of B on plant growth and physiology have been reported, a large majority of B functions and the regulatory mechanisms controlling the B nutritional status remain unknown. The main objective of this project is to elucidate how the greatly B deficiency-sensitive Brassica crop plants process and regulate their B status during vegetative and reproductive growth. In this context, the project aims at identifying the mode of action of B in mechanisms regulating the B status itself and uncovering those mechanisms contributing to B efficiency in different genotypes. Plant species subjected to investigation will be the agronomically important oilseed and vegetable plant Brassica napus (rapeseed) and its close relative the genetic and molecular model plant Arabidopsis thaliana. Questions addressed within the scope of this project should lead to a detailed understanding of mechanisms controlling B uptake and allocation from the level of the whole plant down to the cellular level. B transport routes and rates will be determined in sink- and source tissues and in developmental periods with a particularly high B demand. A special focus will be on the identification of B transport bottlenecks and the analysis of B deficiency-sensitive transport processes to and within the highly B-demanding reproductive organs. Recent studies in Arabidopsis suggest that Nodulin26-like Intrinsic Proteins (NIPs), which belong to the aquaporin channel protein family, are essential for plant B uptake and distribution. The systematic focus on the molecular and physiological characterization of B. napus NIPs will clarify their role in B transport and will identify novel NIP-associated mechanisms playing key roles in the B response network.To further resolve the mostly unknown impact of the B nutritional status on gene regulation and metabolism, a transcript and metabolite profile of B-sufficient and B-deficient rapeseed plants will be generated. Additionally, an Arabidopsis transcription factor knockout collection (greater 300 lines) will be screened for abnormalities in responses to the B nutritional status. This will identify yet unknown B-responsive genes (transcription factors and their targets) and gene products (enzymes or metabolite variations) playing key roles in signalling pathways and mechanisms regulating the B homeostasis. Boron (in form of boric acid) and arsenite (As) share in all likelihood the same NIP-mediated transport pathways. To assess the consequences of this dual transport pathway the so far unstudied impact of the plants B nutritional status on the accumulation and distribution of As will be investigated in B. napus. Moreover, the current dimension of the As contamination of Brassica-based food products, to which consumers are exposed to, will be analyzed. usw.
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