In many plant species, FLOWERING LOCUS T and related proteins are the mobile signal that communicates information on photoperiod from the leaves to the shoots, where the transition to flowering is realized. FT expression is tightly controlled at the transcriptional level so that it is restricted to leaves, occurs only in appropriate photoperiods, and integrates ambient temperature and developmental cues, as well as information on biotic and abiotic stress. We previously established that FT transcription in the model plant Arabidopsis thaliana requires proximal promoter cis-elements and a distal enhancer, both evolutionary conserved among Brassicacea species. In addition, FT transcription is blocked prior vernalization in biannual accessions and vernalization-dependency of FT is controlled through a CArG-box located in the first intron that binds the transcriptional repressor FLOWERING LOCUS C (FLC). Chromatin-mediated repression by the Polycomb Group (PcG) pathway is required for photoperiod-dependent FT regulation and participates in FT expression level modulation in response to other cues.In this project, I propose to explore the available sequence data from the 1001 genome project in Arabidopsis to evaluate how often changes in regulatory cis-elements at FT have occurred and how these translate into an adaptive value. Allele-specific FT expression pattern will be measured in F1 hybrids of different accessions in response to varying environmental conditions. FT alleles that show cis-regulatory variation will be further analyzed to pinpoint the causal regulatory changes and study their effect in more detail. The allotetrapolyploid species Brassica napus is a hybrid of two Brassiceae species belonging to the A- and C-type genome, which are in turn mesopolyploid due to a genome triplication that occurred ca. 10x106 years ago. We will determine allele-specific expression of FT paralogs from both genomes of a collection of B. napus accessions. The plants will be grown in the field in changing environmental conditions to maximize the chance to detect expression variation of the paralogs. We will compare the contribution of the founder genomes to the regulation of flowering time and asses variation in this contribution. A particular focus will be to study the impact of chromatin-mediated repression on allele selection in B. napus.
Introduction: In Malaysia, excessive nutrients from livestock waste management systems are currently released to the environment. Particularly, large amounts of manure from intensive pig production areas are being excreted daily and are not being fully utilised. Alternatively, the excess manure can be applied as an organic fertiliser source in neighbouring cropping systems on the small landholdings of the pig farms to improve soil fertility so that its nutrients will be available for crop uptake instead of being discharged into water streams. Thus, there is a need for better tools to analyse the present situation, to evaluate and monitor alternative livestock production systems and manure management scenarios, and to support farmers in the proper management of manure and fertiliser application. Such tools are essential to quantify, and assess nutrient fluxes, manure quality and content, manure storage and application rate to the land as well as its environmental effects. Several computer models of animal waste management systems to assist producers and authorities are now available. However, it is felt that more development is needed to adopt such models to the humid tropics and conditions of Malaysia and other developing countries in the region. Objectives: The aim is to develop a novel model to evaluate nutrient emission scenarios and the impact of livestock waste at the landscape or regional level in humid tropics. The study will link and improve existing models to evaluate emission of N to the atmosphere, and leaching of nutrients to groundwater and surface water. The simulation outputs of the models will be integrated with a GIS spatial analysis to model the distribution of nutrient emission, leaching and appropriate manure application on neighbouring crop lands and as an information and decision support tool for the relevant users.
Wheat (Triticum aestivum L.) is grown worldwide and is one of the most important crops for human nutrition. Einkorn wheat (Triticum monococcum) is a diploid relative of bread wheat and both have the A genome in common. The timing of flowering is of major importance for plants to optimally adjust their life cycle to diverse environments. QTL mapping studies indicated that flowering time in cereals is a complex trait, which is controlled by three different pathways: vernalization, photoperiod and earliness per se. In wheat, high-resolution genome-wide association mapping is now possible, because of the availability of a high density molecular marker chip. The main goal of the proposed project is to investigate the regulation of flowering time in wheat using a genome-wide association mapping approach based on a novel high-density SNP array. In particular, the project aims to (1) investigate the phenotypic variation of flowering time of bread wheat and Einkorn wheat in response to environmental cues in multilocation field trials, (2) study the effects of Ppd alleles on flowering time in a candidate 3 gene approach, (3) determine the genetic architecture of flowering time in a high-density genome-wide association mapping, and (4) investigate the plasticity of the genetic architecture of flowering time in wheat by a comparison between bread wheat and Einkorn wheat.
In dem Vorhaben wird untersucht, wie wirksam die absorbierte Lichtenergie in Biomasse konvertiert wird. Vergleichend werden Grünalgen und Diatomeen unter verschiedenen Licht- und Nährstoffbedingungen studiert. Auf diese Weise können die metabolischen Kosten unter Nährstoffmangel oder anderen produktivitätsbegrenzenden Bedingungen studiert werden. So wird auch die Säureanpassung ausgewählter Phytoplankter untersucht, um die Biomassebildung in extrem sauren Tagebaurestseen auf physiologischer Ebene zu verstehen. Es konnte gezeigt werden, dass unter Stickstoffmangel die Überführung anorganischen Kohlenstoffs in Biomassebildung durch eine Veränderung der makromolekularen Zusammensetzung der Zellen ähnlicher Effizienz stattfindet, wie unter optimaler Stickstoffversorgung. Dies führt zu einer ökologisch bedeutsamen Teilentkopplung des C und N Kreislaufs im Ökosystem. Ähnliches beobachtet man auch bei der Anpassung von Phytoplanktonalgen an extrem saure Bedingungen wie man sie in sauren Tagebaurestseen vorfindet.
The nature of the microbial communities inhabiting the deeper soil horizons is largely unknown. It is also not clear why subsurface microorganisms do not make faster use of organic compounds under field conditions. The answer could be provided by a reciprocal soil transfer experiment studying the response of transferred soils to fluctuations in microclimate, organic inputs, and soil biota. The subproject P9 will be responsible for the establishment of reciprocal transfer experiments offering a strong link between subgroups interested in organic matter quality, transport of organic substances, as well as functions of the soil microbial community. A single, high molecular weight substrate (13C labelled cellulose) will be applied at two different levels in the pre-experiment to understand the dose-dependent reaction of soil microorganisms in transferred surface and sub-soils. Uniformly 13C labelled beech roots - representing complex substrates - will be used for the main reciprocal soil transfer experiment. We hypothesize that transferring soil cores between subsoil and surface soil as well as addition of labelled cellulose or roots will allow us to evaluate the relative impact of surface/subsurface habitat conditions and resource availability on abundance, function, and diversity of the soil microbial community. The second objective of the subproject is to understand whether minerals buried within different soil compartments (topsoil vs. subsoil) in the field contribute to creation of hot spots of microbial abundance and activity within a period of two to five years. We hypothesize that soil microorganisms colonize organo-mineral complexes depending on their nutritional composition and substrate availability. The existence of micro-habitat specific microbial communities could be important for short term carbon storage (1 to 6 years). The third objective is to understand the biogeography and function of soil microorganisms in different subsoils. Parent material as well as mineral composition might control niche differentiation during soil development. Depending on size and interconnectedness of niches, colonization and survival of soil microbial communities might be different in soils derived from loess, sand, terra fusca, or sandstone. From the methodological point of view, our specific interest is to place community composition into context with soil microbial functions in subsoils. Our subgroup will be responsible for determining the abundance, diversity, und function of soil microorganisms (13C microbial biomass, 13C PLFA, enzyme activities, DNA extraction followed by quantitative PCR). Quantitative PCR will be used to estimate total abundances of bacteria, archaea and fungi as well as abundances of specific groups of bacteria at high taxonomic levels. We will apply taxa specific bacterial primers because classes or phyla might be differentiated into ecological categories on the basis of their life strategies.
Denitrifizierer (reduzieren N-Oxide zu N2O und/ oder N2), nicht-denitrifizierende N2O-Reduzierer (reduzieren N2O zu N2) und dissimilatorische Nitratreduzierer (DNRA; reduzieren N-Oxides zu NH4+) sind fakultative oder obligate Anaerobier, welche die Emission des Treibhausgases N2O genauso wie die Stickstoffretention beeinflussen. Nicht-denitrifizierende N2O-Reduzierer und dissimilatorische Nitratreduzierer stehen mit Denitrifizierern im Wettbewerb um Elektronendonatoren. Definierte mikrobielle Taxa haben definierte ökophysiologische Eigenschaften, welche ihre Wettbewerbsfähigkeit und Fähigkeit zur N-Gasproduktion bestimmen und werden daher unterschiedlich auf Umweltfaktoren reagieren. Solche Eigenschaften sind jedoch im Wesentlichen für unkultivierte Taxa unbekannt, obwohl diese für die N-Gas Emissionen und Stickstoffretention in Böden bedeutend sind. Daher werden folgende Hypothesen untersucht: (i) Die Denitrifikationsantwort auf Umweltfaktoren wird durch gegensätzliche mikrobielle Gemeinschaften, einschließlich bislang unbekannter Arten, bestimmt und kann durch deren intrinsische ökophysiologische Eigenschaften erklärt werden. (ii) Denitrifikations-, N2O-Reduktions- und DNRA-assoziierte Genexpression und Gemeinschaftsstruktur spiegeln metabolische Zustände und Potenziale wider, weshalb diese zu einer besseren Vorhersagbarkeit von N2O und N2 Flüssen führen. Hochdurchsatzinkubationen unter verschiedensten Bedingungen (einschließlich von 15N-Tracersubstanzen) kombiniert mit funktioneller Genexpression, sowie Gen- und Transkript-basierter Next-Generation-Sequencing-Methodik werden eingesetzt um apparente Michaelis-Menten-Kinetiken und physiologische Parameter stimulierter Taxa zu bestimmen. Funktionelle Gene von Denitrifizierern (nirK/S kodierend für dissimilatorische NO-bildende Nitritreduktasen; nosZI kodierend für N2-bildende dissimilatorische N2O-Reduktasen), nicht denitrifizierenden N2O-Reduzierern (nosZII kodierend für N2-bildende dissimilatorische N2O-Reduktasen der Nichtdenitrifizierer) und DNRA (nrfA kodierend für NH4+-bildende dissimilatorische Nitritreduktasen) werden bevorzugt analysiert. Reaktionsmuster der Zielgemeinschaften und/ oder funktionellen Genexpression auf definierte Umweltparameter werden in Mikrokosmen bestimmt. Der Effekt von Kontrollfaktoren der N-Gasdynamik und Pflanzen auf die Zielgemeinschaften wird in Mesokosmen analysiert. Die Daten werden in der Entwicklung eines erweiterten Denitrifier-regulatory-phenotype-Konzeptes zusammengeführt und werden Einblicke in die Ökophysiologie und Wettbewerbsfähigkeit von Denitrifikanten, nicht-denitrifizierenden N2O-Reduzierern und DNRA unter vielfältigen Bedingungen geben. Antwortfunktionen der Aktivitäten dieser Gruppen auf organischen Kohlenstoff (d.h. Elektronendonatoren), Nitrat und Distickstoffmonoxid, deren Wachstumsraten, Erhaltungsraten und Gemeinschaftsstruktur werden für die Modellierung von Denitrifikation und N-Gasflüssen zur Verfügung gestellt.
Steroid hormones are essential in orchestrating oocyte maturation, i.e. estrogens of follicular origin support the development of the female gamete and fertilization. In this project the concentration of free and conjugated estrogens during follicular development will be analysed and compared to local concentrations in the developing follicle. Cattle are suitable animal models because of the accessibility and suitability for frequent examination and sampling. Furthermore, it has been useful for understanding several features of human reproduction including follicular dynamics, the fate of the emerging follicles is orchestrated mainly by gonadotropins and steroid hormones in a similar manner. Ovarian SULT1E1 participates locally in the regulation of follicular estrogen activity. The ESTcatalysed down-regulation of estrogen activity enables normal ovulation. Conversely, sulfoconjugated estrogens may also be precursors of the production of free estrogens depending on estrogen sulfatase (StS) acitivity. In mammals, follicular luteinisation/ovulation is triggered by a surge in LH and is characterised by numerous physical and biochemical changes, including the decreased production of estradiol (E2). This loss in E2 biosynthetic capacity has been explained by a marked decrease in the expression of key steroidogenic enzymes involved in the follicular production of active estrogens. However, little is known about the regulation of enzymes/proteins responsible for the inactivation and elimination of estrogens, as mediated for example by EST during this period.
The detritusphere is an excellent model to study microbial-physicochemical interactions during degradation of the herbicide MCPA. Whereas during the first phase of SPP 1315 we focused on bacterial and fungal abundance at the soil litter interface and carbon flow between different compartments, the second phase will be devoted to elucidating complex regulation mechanisms of MCPA degradation in the detritusphere: (1) At the cellular level, co-substrate availability and laccase abundance might be important regulators, (2) at the community level, bacteria harbouring different classes of tfdA genes might control degradation of MCPA and (3) at the microhabitat level, interaction between MCPA degraders and organo-mineral surfaces as well as transport processes might be important regulators. The concept of hierarchical regulation of MCPA degradation will be included into the modelling of small-scale microbial growth, MCPA transport and MCPA degradation near the soil-litter interface.
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