Magnetic resonance tomography (MRT) on microcosm soil cores (200 mm Ø) used for CeMiX, comprising naturally stacked subsoil down to 700 mm plus topsoil from CeFiT, will be implemented at a laterally partially open Split 1.5 T magnet, with intended final in-plane spatial resolution of 200 Micro m. Three-dimensional biopore distributions and dynamics of their formation within the cores will be determined non-invasively and compared to complementing CT analyses of SP 2. One major aim is a non-invasive differentiation of the biopores into earthworm- and root system-originating ones and currently air-, water-, root- and earthwormfilled ones, based on NMR relaxation parameters. Attempts will additionally be made to classify different wall coatings of the biopores with regard to their water affinity. Dynamics of water distribution within the microcosm core and its biopore structures, starting from initial values taken from CeFiT (SP 3), will be documented with an in-plane resolution of 5 mm, in parallel to measurements of root growth dynamics for calculation of biomass and root surface area. Special emphasis will be put on the role of the plant root system for a re-distribution of water/D2O (and solutes) between different soil layers. Finally we will attempt MRT-controlled sample collection from the microcosm cores, to get - together with our research unit partners of SPs 4-8 - repeated access to minimally invasively acquired data on nutrient and microorganism distributions in concert with non-invasively collected water and root distribution data as a basis for dynamic modelling of water and solute circuits in SP 10. Beside the microcosm cores, flat rhizotrons as used in SP 3 will be employed to enable measurements of root and shoot hydrostatic pressure profiles with pressure probes, in addition to MRT measurements. In this way water distributions and corresponding driving forces and growth dynamics will be measured altogether in a minimally invasive manner.
In forest ecosystems ectomycorrhizal fungi are responsible for the mobilization of mineral nutrients from soil organic matter (SOM) resulting in a marked increase in productivity of their symbiotic host plants. In return the fungi obtain a significant amount of photosynthetic products from these plants, allowing the formation of an extensive hyphal system. These hyphae constitute a major part of soil biomass and, ultimately, a major source for SOM formation. While plant-fungal nutrient exchange has been analyzed extensively, this proposal is focused on the fungal contribution to SOM formation and on the processes leading to the acquisition of nutrients by the fungi. These two processes will be studied separately and in a quantitative way using isotopic labeling in soil bioreactors. Analysis of the fate of 13C labeled fungal material (Laccaria bicolor) in soil bioreactors will tell how fast and to what extent the various fractions of hyphal biomass are transformed into non-living SOM. As potential molecular or structural markers for SOM formation from fungal hyphae we will analyze characteristic remnants of fungal hyphae in SOM using scanning electron microscopy, DNAfragments using a PCR approach for the fungal rRNA internal transcribed spacerregions and biochemical markers like fatty acids and ergosterol. The impact of ectomycorrhizal mycelia supported by Pinus sylvestris plantlets on 13C- and 15N-labeled SOM and on microbial biomass will be analyzed in separate soil bioreactor experiments.
In freshwater sediments, iron oxidation is dominated by phototrophic and chemotrophic (aerobic and nitrate-reducing) Fe(ll)-oxidizing microorganisms. Although these biogeochemical processes have been investigated in detail in laboratory studies, not much is known about their spatial distribution, interactions (e.g. competition) amongst each other, as well as their response towards environmental perturbations (i.e. temperature, geochemical variations (nutrient, organic matter input)). This research proposal aims to investigate the activity, abundance and resource competition between different chemotrophic (aerobic and (autotrophic/mixotrophic) anaerobic nitrate-reducing) and phototrophic ironoxidizing microorganisms. In order to better understand the spatial distribution of nitrate-reducing iron oxidizing bacteria, microbial nitrate-producing and competing, nitrate-depletion processes will also be studied throughout the sedimentary redox gradient. In addition, the activity and abundance of the ironoxidizing processes will be quantified with (geo)microbiological, molecular and novel spectral imaging techniques. Using high resolution geochemical measurements (microsensors) we will characterize the environmental conditions these bacteria experience in order to determine the role of spatial and functional niche competition in microbial iron oxidation and the interconnection to the N-cycle. Iron mineral formation will be investigated as a function of the microbial spatial and temporal activity, depending on environmental perturbations. The proposed research study will strongly improve the understanding of iron cycling, the interconnection to the N-cycle, as well as interactions and competition between phototrophic and chemotrophic metabolisms in aquatic environments.
Soil organic matter (SOM) controls large part of the processes occurring at biogeochemical interfaces in soil and may contribute to sequestration of organic chemicals. Our central hypothesis is that sequestration of organic chemicals is driven by physicochemical SOM matrix aging. The underlying processes are the formation and disruption of intermolecular bridges of water molecules (WAMB) and of multivalent cations (CAB) between individual SOM segments or between SOM and minerals in close interaction with hydration and dehydration mechanisms. Understanding the role of these mediated interactions will shed new light on the processes controlling functioning and dynamics of biogeochemical interfaces (BGI). We will assess mobility of SOM structural elements and sorbed organic chemicals via advanced solid state NMR techniques and desorption kinetics and combine these with 1H-NMR-Relaxometry and advanced methods of thermal analysis including DSC, TGADSC- MS and AFM-nanothermal analysis. Via controlled heating/cooling cycles, moistening/drying cycles and targeted modification of SOM, reconstruction of our model hypotheses by computational chemistry (collaboration Gerzabek) and participation at two larger joint experiments within the SPP, we will establish the relation between SOM sequestration potential, SOM structural characteristics, hydration-dehydration mechanisms, biological activity and biogechemical functioning. This will link processes operative on the molecular scale to phenomena on higher scales.
Iron(III) (hydr)oxide-organic associations in soils have been recognized to play an important role in the biogeochemical cycling of iron, carbon, and of nutrients like phosphate. In temporarily moist or water-logged soils such associations can form via the coprecipitation of dissolved organic matter (OM) with Fe(III) (hydr)oxides (FHOs). At present, it is generally unknown which factors control the formation and composition of Fe(III)-OM coprecipitates and how the structural properties translate into the cycling of the FHO and OM component involved. The objectives of the project are thus to elucidate (i) the structural properties of Fe(III)- OM coprecipitates under different environmental conditions, (ii) the subsequent stability of Fe(III)-OM coprecipitates against dissolution under both oxic as well as anoxic conditions, (iii) the changes in Fe(III)-OM coprecipitate composition upon redox oscillations, and (iii) their cumulative effects on oxyanion sorption. To achieve these goals, various batch experiments will be conducted. By using multiple analytical tools, this project will gain a fundamental understanding of the abiotic and biotic controls on the formation, structure, and biogeochemical reactivity of Fe(III)-OM coprecipitates in acidic and neutral temporarily moist soils and soils subject to redox oscillations.