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Ecosystem Engineering: Sediment entrainment and flocculation mediated by microbial produced extracellular polymeric substances (EPS)

Sediment erosion and transport is critical to the ecological and commercial health of aquatic habitats from watershed to sea. There is now a consensus that microorganisms inhabiting the system mediate the erosive response of natural sediments ('ecosystem engineers') along with physicochemical properties. The biological mechanism is through secretion of a microbial organic glue (EPS: extracellular polymeric substances) that enhances binding forces between sediment grains to impact sediment stability and post-entrainment flocculation. The proposed work will elucidate the functional capability of heterotrophic bacteria, cyanobacteria and eukaryotic microalgae for mediating freshwater sediments to influence sediment erosion and transport. The potential and relevance of natural biofilms to provide this important 'ecosystem service' will be investigated for different niches in a freshwater habitat. Thereby, variations of the EPS 'quality' and 'quantity' to influence cohesion within sediments and flocs will be related to shifts in biofilm composition, sediment characteristics (e.g. organic background) and varying abiotic conditions (e.g. light, hydrodynamic regime) in the water body. Thus, the proposed interdisciplinary work will contribute to a conceptual understanding of microbial sediment engineering that represents an important ecosystem function in freshwater habitats. The research has wide implications for the water framework directive and sediment management strategies.

The role of turgor in rain-cracking of sweet cherry fruit

Rain-cracking limits the production of many soft and fleshy fruit including sweet cherries world wide. Cracking is thought to result from increased water uptake through surface and pedicel. Water uptake increases fruit volume, and hence, turgor of cells (Pcell) and the pressure inside the fruit (Pfruit) and subjects the skin to tangential stress and hence, strain. When the strain exceeds the limits of extensibility the fruit cracks. This hypothesis is referred to as the Pfruit driven strain cracking. Based on this hypothesis cracking is related to two independent groups of factors: (1) water transport characteristics and (2) the intrinsic cracking susceptibility of the fruit defined as the amount of cracking per unit water uptake. The intrinsic cracking susceptibility thus reflects the mechanical constitution of the fruit. Most studies focussed on water transport through the fruit surface (factors 1), but only little information is available on the mechanical constitution (i.e., Pfruit and Pcell, tensile properties such as fracture strain, fracture pressure and modulus of elasticity of the exocarp; factors 2). The few published estimates of Pfruit in sweet cherry are all obtained indirectly (calculated from fruit water potential and osmotic potentials of juice extracts) and unrealistically high. They exceed those measured by pressure probe techniques in mature grape berry by several orders of magnitude. The objective of the proposed project is to test the hypothesis of the Pfruit driven strain cracking. Initially we will focus on establishing systems of widely differing intrinsic cracking susceptibility by varying species (sweet and sour cherry, Ribes and Vaccinium berries, plum, tomato), genotype (within sweet cherry), stage of development and temperature. These systems will then be used for testing the hypothesis of Pfruit driven strain cracking. We will quantify Pfruit und Pcell by pressure probe techniques and compression tests and the mechanical properties of the exocarp using biaxial tensile tests. When the presence of high Pfruit and Pcell is confirmed by direct measurements, subsequent studies will focus on the mode of failure of the exocarp (fracture along vs. across cell walls) and the relationship between failure thresholds and morphometric characteristics of the exocarp. However, when Pfruit und Pcell are low, the hypothesis of Pfruit driven strain cracking must be rejected and the mechanistic basis for low pressures (presence of apoplastic solutes) clarified on a temporal (in the course of development) and a spatial scale (exocarp vs. mesocarp). We focus on sweet cherry, because detailed information on this species and experience in extending the short harvest period is available. Where appropriate, other cracking susceptible species (sour cherry, plum, Vaccinium, Ribes, tomato) will be included to further extend the experimental period and to maximize the range in intrinsic cracking susceptibility.

Statistical-dynamical methods for scale dependent model evaluation and short term precipitation forecasting (STAMPF)

Das Ziel des Projektes ist die skalenabhängige Evaluierung von Niederschlagsprognosen der DWD-Modellkette (LM/GME) bezüglich dynamischer Parameter und Wolkeneigenschaften. Ein neu entwickelter dynamischer Zustandsindex (DSI), die mit der spezifischen Feuchte gewichtete Divergenz sowie Wolkentyp, Bedeckung und Höhe der Wolkenobergrenze sind die Evaluierungsparamater. Der DSI wurde aus den ursprünglichen Gleichungen abgeleitet und beschreibt die Abweichungen von einem verallgemeinerten dynamischen Gleichgewicht, verursacht durch Instationarität und diabatische Prozesse. Die Evaluierung konzentriert sich auf die Wechselwirkungen zwischen der synoptischen und konvektiven Skala, die häufig die Ursache für extreme Niederschlagsereignisse sind. Sie untersucht die Beziehung zwischen den synoptisch-skaligen Prozessen und der konvektiven Parameterisierung. Eine Voraussetzung der Evaluierung ist eine vom Modell unabhängige feldmäßige Analyse des täglichen Niederschlages und der Wolkenparameter in der Gitterauflösung des LM/GME. Ein schon existierendes Analyseschema der synoptischen Beobachtungen wird weiter verbessert und erweitert durch Satellitendaten. Diese liefern kontinuierliche Wolkendaten und Niederschlagsraten. Die Genauigkeit der analysierten Felder wird mit Hilfe moderner statistischer Methoden abgeschätzt. In einem weiteren Schritt werden die getesteten dynamischen Parameter zu einer quasi-prognostischen Niederschlagsvorhersage oder als Prediktoren für einen MOS-Ansatz verwendet.

Transformation of organic carbon in the terrestrial-aquatic interface

The overarching goal of our proposal is to understand the regulation of organic carbon (OC) transfor-mation across terrestrial-aquatic interfaces from soil, to lotic and lentic waters, with emphasis on ephemeral streams. These systems considerably expand the terrestrial-aquatic interface and are thus potential sites for intensive OC-transformation. Despite the different environmental conditions of ter-restrial, semi-aquatic and aquatic sites, likely major factors for the transformation of OC at all sites are the quality of the organic matter, the supply with oxygen and nutrients and the water regime. We will target the effects of (1) OC quality and priming, (2) stream sediment properties that control the advective supply of hyporheic sediments with oxygen and nutrients, and (3) the water regime. The responses of sediment associated metabolic activities, C turn-over, C-flow in the microbial food web, and the combined transformations of terrestrial and aquatic OC will be quantified and characterized in complementary laboratory and field experiments. Analogous mesocosm experiments in terrestrial soil, ephemeral and perennial streams and pond shore will be conducted in the experimental Chicken Creek catchment. This research site is ideal due to a wide but well-defined terrestrial-aquatic transition zone and due to low background concentrations of labile organic carbon. The studies will benefit from new methodologies and techniques, including development of hyporheic flow path tubes and comparative assessment of soil and stream sediment respiration with methods from soil and aquatic sciences. We will combine tracer techniques to assess advective supply of sediments, respiration measurements, greenhouse gas flux measurements, isotope labeling, and isotope natural abundance studies. Our studies will contribute to the understanding of OC mineralization and thus CO2 emissions across terrestrial and aquatic systems. A deeper knowledge of OC-transformation in the terrestrial-aquatic interface is of high relevance for the modelling of carbon flow through landscapes and for the understanding of the global C cycle.

Biogeochemical Processes in Tropical Soils

In recent years science has taken an increased interest in mineralization processes in tropical soils in particular under minimal tillage operations. Plant litter quality and management strongly affect mineralization-nitrification processes in soil and hence the fate of nitrogen in ecosystems and the environment. Plant secondary metabolites like lignin and polyphenols are poorly degradable and interact with proteins (protein binding capacity) and hence protect them from microbial attack. Nitrification, a microbiological process, directly and indirectly influences the efficiency of recovery of N in the vegetation as well as the loss of N (through denitrification and leaching) causing environmental pollution to water bodies and contributes to global warming (e.g. the greenhouse gas N2O is emitted as a by-product of nitrification and denitrification). Nitrifiers comprise a relatively narrow species diversity (at least as known to date) and are generally thought to be sensitive to low soil pH and stress. Despite these properties nitrification occurs in acid tropical soils with high levels of aluminium and manganese. Thus the main objective of the project will be the identification of micro-organisms and mechanisms responsible for mineralization-nitrification processes in acid tropical soils and the influence of long-term litter input of different chemical qualities and minimal tillage options. The project will include the use of stable isotopes (15N, 13C), mass spectrometry, gas chromatography (CO2, N2O), biochemical methods (PLFA) and molecular biology (16s rRNA., PCR, DGGE)

P 2.3 - Dynamiken von Konvektionen als Kopplung zwischen dem marinen Oberflächenfilm und der Wassermasse

Unsere Motivation liegt in der Tatsache, dass die dynamische Verbindung zwischen dem marinen Oberflächenfilm (engl. sea-surface microlayer, SML) und der darunterliegenden oberflächennahen Wasserschicht über Konvektion zu heterogenen Eigenschaften der SML führt. Dies wiederum steuert das Ausmaß der bio-photochemischen Reaktionen und des Gasaustausches zwischen dem Ozean und der Atmosphäre. Die Konvektion wird durch Verdunstung angetrieben, die die SML abkühlt und es salzhaltiger macht. Infolgedessen wird die SML dichter, sinkt ab und wird durch das darunterliegende Wasser ersetzt. Die auftriebsgetriebene Konvektion wurde jedoch bei der Erforschung der SML und des Gasaustausches als dynamisches Bindeglied zwischen der Atmosphäre und dem Ozean vernachlässigt. Unser Hauptziel ist es, ein mechanistisches Verständnis der Dynamik zwischen der SML und der oberflächennahen Wasserschicht zu beschreiben. Ein mechanistisches Verständnis der Konvektion ist wichtig, da das Ausmaß der bio-photochemischen Reaktionen und Austauschprozessen von Spurengasen, Energie und Impuls letztlich durch Austauschprozesse zwischen der SML und der oberflächennahen Wasserschicht und schließlich mit tieferen Schichten bestimmt wird. Wir werden einen experimentellen Aufbau mit mehreren profilierenden Mikroelektroden und einem optischen Schlierensystem entwickeln, um die Konvektion unter verschiedenen externen Antrieben zu untersuchen. Wir werden den Effekt der horizontalen Strömung aufgrund von Gradienten der Oberflächenspannung (d.h. Marangoni-Effekt) untersuchen. Wir werden auch an dem gemeinsamen Mesokosmen-Experiment BASS teilnehmen, um den Einfluss biogener Tenside auf den konvektiven Transportmechanismus zwischen der SML und der oberflächennahen Wasserschicht zu untersuchen. Im gemeinsamen Feldexperiment BASS werden wir der Frage nachgehen, inwieweit Variationen der klein-skaligen Konvektion durch die Variabilität sub-mesoskaligen (1 km-10 km) und hydrodynamischen Prozessen nahe der Meeresoberfläche beeinflusst werden. Wir werden zwei Forschungskatamarane und eine Flotte von Treibbojen einsetzen, die mit Leitfähigkeits- und Temperatursensoren ausgestattet sind, um Dichteanomalien zwischen der SML und oberflächennahen Wasserschicht zu untersuchen. Wir werden externe ozeanische und atmosphärische Einflüsse beobachten, um die Dichteanomalien zu beschreiben. Schließlich werden wir die gewonnenen Erkenntnisse aus den Laborexperimenten, der Mesokosmos-Studie und der Feldstudie nutzen, um einen mathematischen Rahmen zur Beschreibung von Temperatur- und Salzgehaltsprofilen und deren Schwankungen unter dem Einfluss definierter ozeanischer und atmosphärischer Einflüsse zu entwickeln.

Schwerpunktprogramm (SPP) 1488: Planetary Magnetism (PlanetMag), Structure and electronic transport properties of metallic liquids at conditions of planetary cores

Electrical conductivity is a key parameter in models of magnetic field generation in planetary interiors through magneto-hydrodynamic convection. Measurements of this key material parameter of liquid metals is not possible to date by experiments at relevant conditions, and dynamo models rely on extrapolations from low pressure/temperature experiments, or more recently on ab-initio calculations combining molecular dynamics and linear response calculations, using the Kubo-Greenwood formulation of transport coefficients. Such calculations have been performed for Fe, Fe-alloys, H, He and H-He mixtures to cover the interior of terrestrial and giant gas planets. These simulations are computationally expensive, and an efficient accurate scheme to determine electrical conductivities is desirable. Here we propose a model that can, at much lower computational costs, provide this information. It is based on Ziman theory of electrical conductivity that uses information on the liquid structure, combined with an internally consistent model of potentials for the electron-electron, electron-atom, and atom-atom interactions. In the proposal we formulate the theory and expand it to multi-component systems. We point out that fitting the liquid structure factor is the critical component in the process, and devise strategies on how this can be done efficiently. Fitting the structure factor in a thermodynamically consistent way and having a transferable electron-atom potential we can then relatively cheaply predict the electrical conductivity for a wide range of conditions. Only limited molecular dynamics simulations to obtain the structure factors are required.In the proposed project we will test and advance this model for liquid aluminum, a free-electron like metal, that we have studied with the Kubo-Greenwood method previously. We will then be able to predict the conductivities of Fe, Fe-light elements and H, He, as well as the H-He system that are relevant to the planetary interiors of terrestrial and giant gas planets, respectively.

Forschergruppe (FOR) 1806: The Forgotten Part of Carbon Cycling: Organic Matter Storage and Turnover in Subsoils (SUBSOM), Forschergruppe (FOR) 1806: The Forgotten Part of Carbon Cycling: Organic Matter Storage and Turnover in Subsoils (SUBSOM)

We are currently facing the urgent need to improve our understanding of carbon cycling in subsoils, because the organic carbon pool below 30 cm depth is considerably larger than that in the topsoil and a substantial part of the subsoil C pool appears to be much less recalcitrant than expected over the last decades. Therefore, small changes in environmental conditions could change not only carbon cycling in topsoils, but also in subsoils. While organic matter stabilization mechanisms and factors controlling its turnover are well understood in topsoils, the underlying mechanisms are not valid in subsoils due to depth dependent differences regarding (1) amounts and composition of C-pools and C-inputs, (2) aeration, moisture and temperature regimes, (3) relevance of specific soil organic carbon (SOC) stabilisation mechanisms and (4) spatial heterogeneity of physico-chemical and biological parameters. Due to very low C concentrations and high spatio-temporal variability of properties and processes, the investigation of subsoil phenomena and processes poses major methodological, instrumental and analytical challenges. This project will face these challenges with a transdisciplinary team of soil scientists applying innovative approaches and considering the magnitude, chemical and isotopic composition and 14C-content of all relevant C-flux components and C-fractions. Taking also the spatial and temporal variability into account, will allow us to understand the four-dimensional changes of C-cycling in this environment. The nine closely interlinked subprojects coordinated by the central project will combine field C-flux measurements with detailed analyses of subsoil properties and in-situ experiments at a central field site on a sandy soil near Hannover. The field measurements are supplemented by laboratory studies for the determination of factors controlling C stabilization and C turnover. Ultimately, the results generated by the subprojects and the data synthesized in the coordinating project will greatly enhance our knowledge and conceptual understanding of the processes and controlling factors of subsoil carbon turnover as a prerequisite for numerical modelling of C-dynamics in subsoils.

Strömungsdynamik über ästuarinen Bodenformen

Ziel dieses Projektes ist die Beschreibung von Strömungsmustern über ästuarinen Bodenformen anhand von Rinnenexperimenten und numerischen Simulationen. Bodenformen (Riffel und Dünen) sind weitverbreitete Bestandteile von Flüssen, Ästuaren, Küstengewässern- und Tiefseegebieten. Bodenformen liefern Hinweise auf Richtung und Stärke von Sedimenttransportprozessen, haben einen starken Einfluss auf die über ihnen liegende Strömung und sind zudem von großer sozioökonomischer Bedeutung, z. B. hinsichtlich ihrer Auswirkungen auf die Schiffbarkeit der Gewässer. In vielen Ästuaren bilden sich aufgrund der starken Hydrodynamik und der hohen Verfügbarkeit von sandigen Sedimenten große Bodenformfelder. Die Strömung über diesen Bodenformfeldern unterscheidet sich grundlegend von der Strömung über den bekannten, dreieckigen Bodenformen mit einem Neigungswinkel von 30°, die bisher im Fokus von Labor- und numerischen Modellierungsstudien standen. Ästuarine Bodenformen sind hauptsächlich flachgeböschte Dünen mit mittleren Luvwinkeln von 5 bis 20°. Die Strömungseigenschaften über derartigen, flachen Winkeln sind derzeit nicht genau bekannt. So ist zum Beispiel der Zusammenhang zwischen der Neigung der Leeböschung und dem Vorhandensein oder Fehlen einer intermittierenden oder permanenten Strömungsablösung noch nicht ausreichend verstanden. Außerdem haben ästuarine Dünen ein relativ flaches Tal und steile Böschungen in der Nähe des Kammes, während Flussdünen einen flachen Kamm und in der Nähe des Tals steile Böschungen haben. Die Auswirkungen dieses Unterschieds in der Dünenmorphologie auf die Strömung sind derzeit noch unbekannt. Darüber hinaus wurde der Zusammenhang zwischen einer sich in der Richtung ändernden Gezeitenströmung und der natürlichen Morphologie von Dünen, einschließlich der dreidimensionalen Variationen, noch nicht im Detail untersucht.Im Rahmen der vorgeschlagenen Studie werden mehrere Versuchsreihen in einer großen Laborrinne durchgeführt, um die Strömungseigenschaften (Geschwindigkeit und Turbulenz) über an Ästuardünen angelehnten Modelldünen aus Beton zu charakterisieren. Basierend auf Feldmessungen von Bodenformen in der Weser werden drei Dünenformvarianten untersucht: Steilgeböschte asymmetrische Dünen, flachgeböschte asymmetrische Dünen und flachgeböschte symmetrische Dünen. Darüber hinaus werden hochauflösende numerische Simulationen der Strömung über dreidimensionalen Bodenformfeldern die Rinnenexperimente ergänzen. Mithilfe der Modellsimulationen ist es möglich, die Geschwindigkeitsstrukturen der Gezeitenströmung und die Turbulenzstrukturen über natürlichen, in der Weser vorkommenden Dünenfeldern zu bestimmen. Die Ergebnisse dieses Projekts tragen zu einem besseren Verständnis der komplexen Wechselwirkungen zwischen ästuarinen Dünen und der Gezeitenströmung bei und erlauben eine bessere Parametrisierung der kleinräumigen Prozesse in großräumigen hydro- und morphodynamischen Modellen.

Forest management in the Earth system

The majority of the worlds forests has undergone some form of management, such as clear-cut or thinning. This management has direct relevance for global climate: Studies estimate that forest management emissions add a third to those from deforestation, while enhanced productivity in managed forests increases the capacity of the terrestrial biosphere to act as a sink for carbon dioxide emissions. However, uncertainties in the assessment of these fluxes are large. Moreover, forests influence climate also by altering the energy and water balance of the land surface. In many regions of historical deforestation, such biogeophysical effects have substantially counteracted warming due to carbon dioxide emissions. However, the effect of management on biogeophysical effects is largely unknown beyond local case studies. While the effects of climate on forest productivity is well established in forestry models, the effects of forest management on climate is less understood. Closing this feedback cycle is crucial to understand the driving forces behind past climate changes to be able to predict future climate responses and thus the required effort to adapt to it or avert it. To investigate the role of forest management in the climate system I propose to integrate a forest management module into a comprehensive Earth system model. The resulting model will be able to simultaneously address both directions of the interactions between climate and the managed land surface. My proposed work includes model development and implementation for key forest management processes, determining the growth and stock of living biomass, soil carbon cycle, and biophysical land surface properties. With this unique tool I will be able to improve estimates of terrestrial carbon source and sink terms and to assess the susceptibility of past and future climate to combined carbon cycle and biophysical effects of forest management. Furthermore, representing feedbacks between forest management and climate in a global climate model could advance efforts to combat climate change. Changes in forest management are inevitable to adapt to future climate change. In this process, is it possible to identify win-win strategies for which local management changes do not only help adaptation, but at the same time mitigate global warming by presenting favorable effects on climate? The proposed work opens a range of long-term research paths, with the aim of strengthening the climate perspective in the economic considerations of forest management and helping to improve local decisionmaking with respect to adaptation and mitigation.

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