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KOSMOS 2023 Helgoland mesocosm study on ocean alkalinity enhancement: sediment trap particle flux data and water column biogeochemistry

The data presented herein originates from a mesocosm study conducted as part of the BMBF CDRmare, Retake project (grant agreement no. 03F0895A), aimed at investigating the ecological ramifications of ocean alkalinity enhancement (OAE). Twelve mesocosms were deployed in Helgoland South Harbor, Germany, and systematically sampled using integrated water samplers over the period spanning from March 12th to April 20th, 2023. Six alkalinity levels under two dilution scenarios were established to differentiate between localized and uniform OAE additions. Alkalinity was increased stepwise to ΔTAmax = 1250 μmol kg-1 (250 μmol TA kg-1 increments) using sodium hydroxide (NaOH) with calcium chloride (CaCl2) to simulate cation release during calcium-based mineral dissolution, causing strong carbonate chemistry perturbations (e.g., pHT > 9.25). The dataset encompasses a spectrum of sediment trap particle flux data, water column biogeochemistry including pigment variables, inorganic nutrients, carbonate chemistry parameters. The study and data set offer insights into impacts of alkalinity enhancement on marine ecosystems and their associated biogeochemistry.

Innovative Ansätze zur Verbesserung des Kohlenstoffspeicherpotenzials von Vegetationsküstenökosystemen, Vorhaben: Treibhausgas-Dynamik von Küstenökosystemen

Particulate fucoidan concentrations during 24-days of incubations in mesocosm experiments with brown algae

Six mesocosm experiments with specimens of Fucales or Laminariales were conducted across six georegions (3 mesocosms with brown algae, 3 mesocosms without brown algae). Incubations lasted 24 days, followed by a year-long monitoring of incubation water. During the first 12 days, brown algae were maintained in mesocosms adjacent to control mesocosms, with 1 L of water sampled every second day. Half of the mesocosm water was replaced with fresh seawater after each sampling. Environmental conditions and primary productivity of specimens was recorded during the incubation. After 12 days, specimens were removed and incubation continued for another 12 days, maintaing the same sampling routine. At the end of the 24 day- incubation period, long-term monitoring was set-up with 6-10L of incubation water in two different conditions: one exposed to a controlled light cycle at 20°C, the second set in darkness at 4°C with added nutrients (40 µM NO3- and 3µM PO43-). Additional water samples were collected along transects extending from near-shore brown algae poplulations. Water samples were filtered over pre-combusted GFF filters (450°C, 4.5h), and both the filtrate and filters were analysed for dissolved organic carbon (DOC), particulate organic carbon (POC). Fucoidan was quantified in dissolved (>1kDa) fraction and surface active fraction (SAF) (> 1kDa and negative charged fraction purified with anion exchange chromatography) fractions through monosaccharide quantification after acid-hydrolysis (100°C, 24h) using HPAEC-PAD, according to Engel and Händel, 2011. Intact polysaccharides were detected using structure-sensitive monoclonal antibodies (Torode et al., 2015; Vidal-Melgosa et al., 2021). Microbial cells were quantified using DAPI-cell staining and counting. Semi-quantitative measurements of particulate fucoidan were performed via acid hydrolysis of GFF filter pieces, followed by monosaccharide analysis via HPAEC-PAD. Sedimented particles to bottom of mesocosms were scooped out on day 24 for monosaccharide analysis and BAM1 antibody binding specific to fucoidan.

Total carbohydrates quantified in sediment cores from coastal vegetated ecosystems

50-cm deep sediment cores were taken in saltmarsh, seagrass, mangroves and unvegetated areas around the German Bight, Malaysia and Columbia in 2022 and 2023. Up to 3 points per ecosystem were sampled along a transect, in total 93 cores were analysed. Carbohydrates were sequentially extracted using MilliQ-water and 0.3 M EDTA for later analyses. The total carbohydrate content was assessed using the phenol-sulfuric acid assay (Dubois et al., 1956). Briefly, 100 µL of resuspended samples or extracts were mixed with 100 µL of 5% phenol solution, followed by the addition of 500 µL of concentrated sulfuric acid. The reaction mixture was incubated at room temperature for 10 minutes, then further incubated at 30°C for 20 minutes. Absorbance at 490 nm was measured using a Spectramax Id3 plate reader (Molecular Devices) and quantified against a glucose standard curve.

Monosaccharides quantified in sediment cores from coastal vegetated ecosystems

50-cm deep sediment cores were taken in saltmarsh, seagrass, mangroves and unvegetated areas around the German Bight, Malaysia and Columbia in 2022 and 2023. Up to 3 points per ecosystem were sampled along a transect, in total 93 cores were analysed. Carbohydrates were sequentially extracted using MilliQ-water and 0.3 M EDTA for later analyses. Extracts were acid hydrolysed (1 M HCl, 24 h, 100°C) and monosaccharides were analysed using anion exchange chromatography with pulsed amperometric detection (HPAEC-PAD), according to Engel et al., 2011. Briefly, sample analysis was performed using a Dionex ICS-5000+ system with a CarboPac PA10 analytical column (2 × 250 mm) and a CarboPac PA10 guard column (2 × 50 mm). Neutral and amino sugars were separated under isocratic conditions with 18 mM NaOH, while acidic monosaccharides were separated using a gradient up to 200 mM NaCH₃COO.

Polysaccharide fucoidan BAM1 and arabinogalactan-protein glycan JIM13 antibody binding in sediment cores from coastal vegetated ecosystems

50-cm deep sediment cores were taken in saltmarsh, seagrass, mangroves and unvegetated areas around the German Bight, Malaysia and Columbia in 2022 and 2023. Up to 3 points per ecosystem were sampled along a transect, in total 93 cores were analysed. Carbohydrates were sequentially extracted using MilliQ-water and 0.3 M EDTA for later analyses. For more specific analysis enzyme-linked immunosorbent assay (ELISA) was used for detection of fucoidan and arabinogalactan-protein glycan as described in the following studies (Vidal-Melgosa et al., 2021 and Cornuault et al., 2014). In short, 100 µL of sediment extracts were added to a pre-coated 96-well plate and incubated overnight at 4°C. The signal was developed using primary antibodies, BAM1 (fucoidan) and JIM13 (arabinogalactan-protein glycan), diluted 1:10 in skim milk PBS solution, followed by anti-rat antibody at a 1:1000 dilution in the same solution. Absorbance was measured at 450 nm using a Spectramax Id3 plate reader (Molecular Devices).

Element concentrations from two benthic chambers and the ambient bottom water during an in-situ incubation experiment in July 2025

The dataset contains major and trace element concentrations measured by inductively coupled plasma optical emission spectrometry (ICP-OES) from water samples collected during a 16-day in-situ incubation experiment in the Baltic Sea (2025-07-12 to 2025-07-29). Samples were collected using an automated glass-syringe sampler deployed within two benthic chambers of a Biogeochemical Observatory (BIGO, Sommer et al., 2009) at 54° 34.432' N, 10° 10.776' E, at 22 m water depth. In one chamber, 29 g of fine calcite powder were added to the bottom water to assess the potential of enhanced benthic calcite weathering as an ocean alkalinity enhancement (OAE) strategy. Seven samples per chamber and from the ambient bottom water were analyzed to trace elemental changes associated with calcite dissolution.

Nutrient concentrations from two benthic chambers and the ambient bottom water during an in-situ incubation experiment in July 2025

The dataset contains dissolved nutrient concentrations from water samples collected during a 16-day in-situ incubation experiment in the Baltic Sea (2025-07-12 to 2025-07-29). Samples were collected using an automated glass-syringe sampler deployed within two benthic chambers of a Biogeochemical Observatory (BIGO, Sommer et al., 2009) at 54° 34.432' N, 10° 10.776' E, at 22 m water depth. In one chamber, 29 g of fine calcite powder were added to the bottom water as part of an enhanced benthic calcite weathering experiment. Seven samples per chamber and from the ambient bottom water were analyzed to assess potential nutrient fluxes associated with the calcite addition and benthic biogeochemical processes.

Alkalinity concentrations from two benthic chambers and the ambient bottom water during an in-situ incubation experiment in July 2025

The dataset contains total alkalinity measurements from water samples collected during a 16-day in-situ incubation experiment in the Baltic Sea (2025-07-12 to 2025-07-29). Samples were collected using an automated glass-syringe sampler deployed within two benthic chambers of a Biogeochemical Observatory (BIGO, Sommer et al., 2009) at 54° 34.432' N, 10° 10.776' E, at 22 m water depth. In one chamber, 29 g of fine calcite powder were added to the bottom water. Seven samples per chamber and from the ambient bottom water were taken to monitor alkalinity changes resulting from calcite dissolution, providing a direct measure of the ocean alkalinity enhancement (OAE)

Processed flow discharge data from the Neu Darchau gauging station between 1969 and 2019

The dataset includes processed flow discharge data from Neu Darchau gauging station (Elbe-km 536.4) that provided hydrological information for calculating alkalinity transport potential. The monthly sums were calculated from daily mean discharge measurements from Neu Darchau (station number: 6340110) available from the Global Runoff Data Centre (https://grdc.bafg.de/).

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