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Dynamic (redox) interfaces in soil - Carbon turnover in microbial biomass and flux into soil organic matter

Existing models of soil organic matter (SOM) formation consider plant material as the main source of SOM. Recent results from nuclear magnetic resonance analyses of SOM and from own incubation studies, however, show that microbial residues also contribute to a large extent to SOM formation. Scanning electron microscopy showed that the soil mineral sur-faces are covered by numerous small patchy fragments (100 - 500 nm) deriving from microbial cell wall residues. We will study the formation and fate of these patchy fragments as continuously produced interfaces in artificial soil systems (quartz, montmorillonite, iron oxides, bacteria and carbon sources). We will quantify the relative contributions of different types of soil organisms to patchy fragment formation and elucidate the effect of redox con-ditions and iron mineralogy on the formation and turnover of patchy fragments. The develop-ment of patchy fragments during pedogenesis will be followed by studying soil samples from a chronosequence in the forefield of the retreating Damma glacier. We will characterize chemical and physical properties of the patchy fragments by nanothermal analysis and microscale condensation experiments in an environmental scanning electron microscope. The results will help understanding the processes at and characteristics of biogeochemical interfaces.

Barley dwarfs acting big in agronomy. Identification of genes and characterization of proteins involved in dwarfism, lodging resistance and crop yield

Barley (Hordeum vulgare) is an important cereal grain which serves as major animal fodder crop as well as basis for malt beverages or staple food. Currently barley is ranked fourth in terms of quantity of cereal crops produced worldwide. In times of a constantly growing world population in conjunction with an unforeseeable climate change and groundwater depletion, the accumulation of knowledge concerning cereal growth and rate of yield gain is important. The Nordic Genetic Resource Center holds a major collection of barley mutants produced by irradiation or chemical treatment. One phenotypic group of barley varieties are dwarf mutants (erectoides, brachytic, semidwarf, uzu). They are characterized by a compact spike and high rate of yield while the straw is short and stiff, enhancing the lodging resistance of the plant. Obviously they are of applied interest, but they are also of scientific interest as virtually nothing is known about the genes behind the development of plant dwarfism. The aim of this project is to identify and isolate the genes carrying the mutations by using state of the art techniques for gene cloning at the Carlsberg Laboratory. The identified genes will be connected with the mutant phenotype to reveal the gene function in general. One or two genes will be overexpressed and the resulting recombinant proteins will be biochemically and structurally characterized. The insights how the mutation effects the protein will display the protein function in particular. Identified genes and their mutant alleles will be tested in the barley breeding program of the Carlsberg brewery.

Forschergruppe (FOR) 986: Structural Change in Agriculture, How should Model Linkages be designed to analyze the Effects of Global Agricultural Trade Liberalization at the Farm Level?

In the last decades agricultural policy has gained increasingly in complexity. Nowadays it influences the food and agricultural sector from the global market down to the farm level. Widespread research questions, like the impact of the WTO negotiations on the farm structure, most often require comprehensive modeling frameworks. Thus, different types of models are utilized according to their comparative advantages and combined in a strategically useful way to more accurately represent micro and macro aspects of the food and agricultural sector. Consequently, in recent years we have seen an increase in the development and application of model linkages. Given this background, the overall objective of this subproject is a systematic sensitivity analysis of model linkages that gradually involves more and more characteristics of the linkage and the corresponding transfer of results between models. In addition, the project aims to answer the following specific question: How does structural change at the farm level influence aggregate supply and technical progress? Under which conditions is it possible to derive macro-relationships from micro-relationships? How does the aggregation level influence the model results and how can possible problems be overcome? This procedure is used to quantify the effects and to derive conditions for optimal interaction of the connected models. The analysis is based on the general equilibrium model GTAP (Global Trade Analysis Project) and the farm group model FARMIS (Farm Modelling Information System) which are employed in conjunction to analyze the effects of WTO negotiations on the farm level.

Natural variation of flowering time due to cis-regulatory evolution of FLOWERING LOCUS T and its orthologs and paralogs in Brassica napus

In many plant species, FLOWERING LOCUS T and related proteins are the mobile signal that communicates information on photoperiod from the leaves to the shoots, where the transition to flowering is realized. FT expression is tightly controlled at the transcriptional level so that it is restricted to leaves, occurs only in appropriate photoperiods, and integrates ambient temperature and developmental cues, as well as information on biotic and abiotic stress. We previously established that FT transcription in the model plant Arabidopsis thaliana requires proximal promoter cis-elements and a distal enhancer, both evolutionary conserved among Brassicacea species. In addition, FT transcription is blocked prior vernalization in biannual accessions and vernalization-dependency of FT is controlled through a CArG-box located in the first intron that binds the transcriptional repressor FLOWERING LOCUS C (FLC). Chromatin-mediated repression by the Polycomb Group (PcG) pathway is required for photoperiod-dependent FT regulation and participates in FT expression level modulation in response to other cues.In this project, I propose to explore the available sequence data from the 1001 genome project in Arabidopsis to evaluate how often changes in regulatory cis-elements at FT have occurred and how these translate into an adaptive value. Allele-specific FT expression pattern will be measured in F1 hybrids of different accessions in response to varying environmental conditions. FT alleles that show cis-regulatory variation will be further analyzed to pinpoint the causal regulatory changes and study their effect in more detail. The allotetrapolyploid species Brassica napus is a hybrid of two Brassiceae species belonging to the A- and C-type genome, which are in turn mesopolyploid due to a genome triplication that occurred ca. 10x106 years ago. We will determine allele-specific expression of FT paralogs from both genomes of a collection of B. napus accessions. The plants will be grown in the field in changing environmental conditions to maximize the chance to detect expression variation of the paralogs. We will compare the contribution of the founder genomes to the regulation of flowering time and asses variation in this contribution. A particular focus will be to study the impact of chromatin-mediated repression on allele selection in B. napus.

Ökologische Bewertungskriterien für Desinfektionsmittel und deren Adaptierung in der Desinfektionsmittel-Datenbank der Stadt Wien

Das Projekt ÖkoKauf der Stadt Wien hat es sich zum Ziel gesetzt, durch die Erstellung von ökologischen Kriterien, Pilotprojekte und durch Bewusstseinsarbeit das Beschaffungswesen im Magistrat Wien weiter zu ökologisieren. In diesem Rahmen widmete sich der Arbeitskreis 'Desinfektionsmittel unter der Leitung der Wiener Umweltanwaltschaft (WUA) der Aufgabe, für Hygienefachleute ein Instrument zur Beurteilung der Auswirkungen von Desinfektionsmitteln auf Gesundheit und Umwelt zu erstellen. Das Österreichische Ökologie-Institut führte eine Daten- und Literaturrecherche durch, das Umweltbundesamt nahm ergän-zende ökotoxikologische Tests an Wirkstoffen und -produkten vor und 'die umweltberatung ermittelte stationsbezogene Desinfektionsmittelverbräuche in Wiener Krankenanstalten. Die Recherche- und Testergebnisse zu Desinfektionsmittelwirkstoffen und -produkten wurden in einer vom IFZ konzipierten und von der Magistratsabteilung 14 realisierten Datenbank zusammengefasst. Um die ökotoxikologischen Produkteigenschaften vergleichbar zu machen, wurde vom IFZ ein Bewertungsraster entwickelt und in die Datenbank integriert. Dabei werden nachteilige Wirkungen auf die Gesundheit anhand von vier Wirkungskategorien erfasst: Akute Giftigkeit; Reizwirkung auf die Haut; Sensibilisierung, allergenes Potenzial sowie Erbgutschädigende, krebserzeugende und fruchtschädigende Eigenschaften. Zusammen mit der Berücksichtigung des Verhaltens in Oberflächengewässern (Abbauverhalten, Bioakkumulationspotenzial, Toxizität für Wasserorganismen) sowie dem Verhalten in Kläranlagen werden insgesamt sechs Bewertungszahlen generiert, die auf einer Skala von 1 (vernachlässigbar) bis 5 (sehr hoch) das gesamte Gefährdungsprofil des Stoffes beschreiben sollen. Das Gefährdungsprofil eines Handelsproduktes errechnet sich aus den Gefährdungsprofilen der darin enthaltenen Wirkstoffe anhand eines Algorithmus: Dabei wird die Annahme getroffen, dass die Produkteigenschaften von der Konzentration der darin enthaltenen Wirkstoffe abhängen. Bei der Bewertung ist außerdem zu gewährleisten, dass ein Wirkstoff mit einem hohen Gefährdungspotenzial angemessen berücksichtigt wird, auch und gerade wenn seine Konzentration im Produkt gering ist. In der Literatur wird dazu eine logarithmische Skalierung vorgeschlagen. Die Bewertung berücksichtigt derzeit die Wirkstoffe sowie Anwendungsverdünnungen. Die Zusammenfassung der Produkte in Verwendungs- bzw. Expositionskategorien ermöglicht letztlich eine vergleichende Bewertung. Da das Bewertungsraster gerade auf eine vergleichende Bewertung von Produkten abzielt, unterliegt er einer ständigen kritischen Diskussion, die auch häufig von den Herstellern geführt wird. Dieser Umstand sowie das Faktum von Produktlebenszyklen erfordern ein ständiges Update der in der Datenbank enthaltenen Informationen und eine Anpassung des Bewertungsmodells an den aktuellen Stand von Forschung sowie Standards der Stoff- und Produktpolitik.

Unraveling the genetic architecture of winter hardiness and quality traits in durum by genome wide and canidate gene based association mapping

Durum wheat is mainly grown as a summer crop. An introduction of a winter form failed until now due to the difficulty to combine winter hardiness with required process quality. Winter hardiness is a complex trait, but in most regions the frost tolerance is decisive. Thereby a major QTL, which was found in T. monococcum, T.aestivum, H. vulgare and S.cereale on chromosome 5, seems especially important. With genotyping by sequencing it is now possible to make association mapping based on very high dense marker maps, which delivers new possibilities to detect main and epistatic effects. Furthermore, new sequencing techniques allow candidate gene based association mapping. The main aim of the project is to unravel the genetic architecture of frost tolerance and quality traits in durum. Thereby, the objectives are to (1) determine the genetic variance, heritability and correlations among frost tolerance and quality traits, (2) examine linkage disequilibrium and population structure, (3) investigate sequence polymorphism at candidate genes for frost tolerance, and (4) perform candidate gene based and genome wide association mapping.

Tierexperimentelle Untersuchungen zum Verhalten von PCB, HCB und HCH-Isomeren in der Nahrungskette Pflanze - Milchtier - Milch - Mensch

Im Rahmen des Forschungsvorhabens werden Untersuchungen zum Vorkommen der genannten Verbindungen und ihr Verhalten in der Nahrungskette (Carry Over von Futtermitteln fuer Milchtiere in die Milch u.ae.) durchgefuehrt.

Forschergruppe (FOR) 456 degree of celsius: The role of Biodiversity for element cycling and trophic interactions: An experimental approach in a grassland community, Teilprojekt Decomposers: Decomposer - interaction webs and the effect of belowground biota for ecosystem processes - JenaExp

The soil fauna affects soil structure, nutrient mineralization, decomposition processes, and the activity and composition of the microbial community in soil. These effects likely also modify plant performance, plant competition and the use of plant tissue by above-ground herbivores. The proposed project investigates effects of earthworms and soil insects on the above-ground system in grassland communities of different diversity. Earthworm and soil insect density is manipulated in experimental plots differing in plant diversity. The manipulations include the combined exclusion of below-ground insects and above-ground herbivores. It is expected that the response of the above-ground plant and animal community to manipulations of soil animal populations depends on plant species, plant diversity and plant functional group. The differential response is expected to propagate into the herbivore system thereby affecting the structure of the above-ground animal community.

Vegetation dynamics following forest stand destruction by snow avalange in the Berchtesgaden National Park

On 18 Januar 1986 at the east-looking slope of the Kleiner Watzmann in the Berchtesgaden National Park a snow avalanche came down from an elevation of about 2.000 m to the Königssee near St. Bartholomae (610 m above see level). It destroyed 12 to 15 ha of old growth forests dominated by beech (Fagus sylvatica); about 2.000 m3 of wood were thrown down. The soil survace was not intensively effected by the snow avalange. Because the area is situated in the central protection zone of the national park no clearing procedure was done, and a free stand develeopment without any direct impact of man is allowed to take place. In 1989 permanent plots (3 transects, each starting in the surrounding forest and crossing to avalanche area) were established. Vegetation and stand structure records were carried out in 1989, 1994 and 1999. Vegetation development in the first place is characterised by (1) a re-establishment of the tree layer by the (beech) trees, which were bent to the ground but not killed by the avalanche, (2) by seedling and sapling establishment (especially Acer and Fraxinus, but not by pioneer trees) and (3) by continuing floristic composition of the ground vegetation (coverage increasing or decresing depending on the light conditions).

Water use characteristics of bamboo (South China)

Bamboos (Poaceae) are widespread in tropical and subtropical forests. Particularly in Asia, bamboos are cultivated by smallholders and increasingly in large plantations. In contrast to trees, reliable assessments of water use characteristics for bamboo are very scarce. Recently we tested a set of methods for assessing bamboo water use and obtained first results. Objectives of the proposed project are (1) to further test and develop the methods, (2) to compare the water use of different bamboo species, (3) to analyze the water use to bamboo size relationship across species, and (4) to assess effects of bamboo culm density on the stand-level transpiration. The study shall be conducted in South China where bamboos are very abundant. It is planned to work in a common garden (method testing), a botanical garden (species comparison, water use to size relationship), and on-farm (effects of culm density). Method testing will include a variety of approaches (thermal dissipation probes, stem heat balance, deuterium tracing and gravimetry), whereas subsequent steps will be based on thermal methods. The results may contribute to an improved understanding of bamboo water use characteristics and a more appropriate management of bamboo with respect to water resources.

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