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Flowering time, development and yield in oilseed rape (Brassica napus): Sequence diversity in regulatory genes

Flowering time (FTi) genes play a key role as regulators of complex gene expression networks, and the influence of these networks on other complex systems means that FTi gene expression triggers a cascade of regulatory effects with a broad global effect on plant development. Hence, allelic and expression differences in FTi genes can play a central role in phenotypic variation throughput the plant lifecycle. A prime example for this is found in Brassica napus, a phenotypically and genetically diverse species with enormous variation in vernalisation requirement and flowering traits. The species includes oilseed rape (canola), one of the most important oilseed crops worldwide. Previously we have identified QTL clusters related to plant development, seed yield and heterosis in winter oilseed rape that seem to be conserved in diverse genetic backgrounds. We suspect that these QTL are controlled by global regulatory genes that influence numerous traits at different developmental stages. Interestingly, many of the QTL clusters for yield and biomass heterosis appear to correspond to the positions of meta-QTL for FTi in spring-type and/or winter-type B. napus. Based on the hypothesis that diversity in FTi genes has a key influence on plant development and yield, the aim of this study is a detailed analysis of DNA sequence variation in regulatory FTi genes in B. napus, combined with an investigation of associations between FTi gene haplotypes, developmental traits, yield components and seed yield.

Tierexperimentelle Untersuchungen zum Verhalten von PCB, HCB und HCH-Isomeren in der Nahrungskette Pflanze - Milchtier - Milch - Mensch

Im Rahmen des Forschungsvorhabens werden Untersuchungen zum Vorkommen der genannten Verbindungen und ihr Verhalten in der Nahrungskette (Carry Over von Futtermitteln fuer Milchtiere in die Milch u.ae.) durchgefuehrt.

Biopores in the subsoil: Formation, nutrient turnover and effects on crops with distinct rooting systems (BioFoNT)

Perennial fodder cropping potentially increases subsoil biopore density by formation of extensive root systems and temporary soil rest. We will quantify root length density, earthworm abundance and biopore size classes after Medicago sativa, Cichorium intybus and Festuca arundinacea grown for 1, 2 and 3 years respectively in the applied research unit's Central Field Trial (CeFiT) which is established and maintained by our working group. Shoot parameters including transpiration, gas exchange and chlorophyll fluorescence will frequently be recorded. Precrop effects on oilseed rape and cereals will be quantified with regard to crop yield, nutrient transfer and H2-release. The soil associated with biopores (i.e. the driloshpere) is generally rich in nutrients as compared to the bulk soil and is therefore supposed to be a potential hot spot for nutrient acquisition. However, contact areas between roots and the pore wall have been reported to be low. It is still unclear to which extent the nutrients present in the drilosphere are used and which potential relevance subsoil biopores may have for the nutrient supply of crops. We will use a flexible videoscope to determine the root-soil contact in biopores. Nitrogen input into the drilosphere by earthworms and potential re-uptake of nitrogen from the drilosphere by subsequent crops with different rooting systems (oilseed rape vs. cereals) will be quantified using 15N as a tracer.

Effects of canopy structure on salinity stress in cucumber (Cucumis sativus L.)

Salinity reduces the productivity of cucumber (Cucumis sativus L.) through osmotic and ionic effects. For given atmospheric conditions we hypothesize the existence of an optimal canopy structure at which water use efficiency is maximal and salt accumulation per unit of dry matter production is minimal. This canopy structure optimum can be predicted by integrating physiological processes over the canopy using a functional-structural plant model (FSPM). This model needs to represent the influence of osmotic stress on plant morphology and stomatal conductance, the accumulation of toxic ions and their dynamics in the different compartments of the system, and their toxic effects in the leaf. Experiments will be conducted to parameterize an extended cucumber FSPM. In in-silico experiments with the FSPM we attempt to identify which canopy structure could lead to maximum long-term water use efficiency with minimum ionic stress. The results from in-silico experiments will be evaluated by comparing different canopy structures in greenhouses. Finally, the FSPM will be used to investigate to which extent the improvement of individual mechanisms of salt tolerance like reduced sensitivity of stomatal conductance or leaf expansion can contribute to whole-plant salt tolerance.

The effect of elevated atmospheric CO2 concentration on gross nitrogen dynamics, plant N-uptake and microbial community dynamics in a permanent grassland

To predict ecosystem reactions to elevated atmospheric CO2 (eCO2) it is essential to understandthe interactions between plant carbon input, microbial community composition and activity and associated nutrient dynamics. Long-term observations (greater than 13 years) within the Giessen Free Air Carbon dioxide Enrichment (Giessen FACE) study on permanent grassland showed next to an enhanced biomass production an unexpected strong positive feedback effect on ecosystem respiration and nitrous oxide (N2O) production. The overall goal of this study is to understand the long-term effects of eCO2 and carbon input on microbial community composition and activity as well as the associated nitrogen dynamics, N2O production and plant N uptake in the Giessen FACE study on permanent grassland. A combination of 13CO2 pulse labelling with 15N tracing of 15NH4+ and 15NO3- will be carried out in situ. Different fractions of soil organic matter (recalcitrant, labile SOM) and the various mineral N pools in the soil (NH4+, NO3-, NO2-), gross N transformation rates, pool size dependent N2O and N2 emissions as well as N species dependent plant N uptake rates and the origin of the CO2 respiration will be quantified. Microbial analyses will include exploring changes in the composition of microbial communities involved in the turnover of NH4+, NO3-, N2O and N2, i.e. ammonia oxidizing, denitrifying, and microbial communities involved in dissimilatory nitrate reduction to ammonia (DNRA). Stable Isotope Probing (SIP) and mRNA based analyses will be employed to comparably evaluate the long-term effects of eCO2 on the structure and abundance of these communities, while transcripts of these genes will be used to target the fractions of the communities which actively contribute to N transformations.

Rehabilitation of Degraded Forests in Yunnan (German-Chinese Cooperation for Agrarian Research)

Background: An increasing frequency of massive flooding along the lower Yangtse River in China ended in a disastrous catastrophe in summer 1998 leaving several thousand people homeless, more than 3.600 dead and causing enormous economic damage. Inappropriate land-use techniques and large scale timber felling in the water catchment of the upper Yangtse and its feeder streams were stated to be the main causes. Immediate timber cutting bans were imposed and investigations on land use patterns were initiated by the Chinese Government. The Institute for World Forestry of the Federal Research Centre for Forestry and Forest Products was approached by the Yunnan Academy of Forestry in Kunming to exchange experiences and to cooperate scientifically in the design and application of appropriate afforestation and silvicultural management techniques in the water catchment area of the Yangtse. This cooperation was initiated in 1999 and is based on formal agreements in the fields of agrarian research between the German and Chinese Governments. Objectives: The cooperation was in the first step focussing on the identification of factors which caused the enormous floodings. After their identification measures of prevention were determined and put into practice. In this context experiences made in past centuries in the alpine region of central Europe served as an incentive and example for similar environmental problems and solutions under comparable conditions. Relevant key questions of the cooperation project were: - Analysis of forest related factors influencing the recent floodings of the Yangtse, - Analysis and evaluation of silvicultural management experiences from central Europe for know-how transfer, - Evaluation of rehabilitation measures for successful application in Yunnan, - Dissemination of knowledge through vocational training. Results: - Frequent wild grazing of husbandry is a key factor for forest degeneration beyond unsustainable timber harvests, forest fires and insect calamities leading to increased water run-off in the mountainous region of Yunnan; - Browsing of cattle interrupts succession thus avoiding natural regeneration and leaving a logging ban ineffective; - Mountain pasture in the Alps had similar effects in the past in central Europe. The introduction of controlled grazing has led to an ecologically compatible coexistence of pasture and ecology. Close-to-nature forestry can have positive effects in this sensitive environment. - Afforestation with site adopted broadleaves and coniferous tree species was implemented on demonstration level using advanced techniques in Yunnan.

Calcium cycling in the soil-fig-bat compartment of a neotropical rain forest on spatially heterogeneous substrate

Calcium supply in tropical soils is variable and frequently low. In spite of the heterogeneous Ca supply, some plant species, such as figs, maintain high Ca concentrations in their tissues. Figs are keystone species with more than proportional importance for the functioning of a tropical rain forest. High Ca concentrations in fig fruits may render them particularly attractive for frugivorous vertebrates. We propose to study the whole Ca cycling from soil through a selected fig species, Ficus insipida Willd. and frugivorous bats, their main dispersers, back to soil. The study will be conducted in Panama on sites differing in soil Ca status to assess the importance of soil Ca availability for fig fruit content and bat reproduction. We will quantify aboveground Ca fluxes for 16 trees along a gradient of Ca availability in soil. We will determine (1) Ca concentrations in soils, figs and leaves, (2) nutritional quality of fig and other bat-dispersed fruits and their importance for Ca balance in relation to reproduction of fruit-eating bats, (3) Ca fluxes with litterfall, throughfall, stemflow, bat pellets and faeces, (4) the importance of the contribution of bats to the Ca cycle of individual fig trees, and (5) the effect of fig trees on soil Ca concentrations.

Ökologische Bewertungskriterien für Desinfektionsmittel und deren Adaptierung in der Desinfektionsmittel-Datenbank der Stadt Wien

Das Projekt ÖkoKauf der Stadt Wien hat es sich zum Ziel gesetzt, durch die Erstellung von ökologischen Kriterien, Pilotprojekte und durch Bewusstseinsarbeit das Beschaffungswesen im Magistrat Wien weiter zu ökologisieren. In diesem Rahmen widmete sich der Arbeitskreis 'Desinfektionsmittel unter der Leitung der Wiener Umweltanwaltschaft (WUA) der Aufgabe, für Hygienefachleute ein Instrument zur Beurteilung der Auswirkungen von Desinfektionsmitteln auf Gesundheit und Umwelt zu erstellen. Das Österreichische Ökologie-Institut führte eine Daten- und Literaturrecherche durch, das Umweltbundesamt nahm ergän-zende ökotoxikologische Tests an Wirkstoffen und -produkten vor und 'die umweltberatung ermittelte stationsbezogene Desinfektionsmittelverbräuche in Wiener Krankenanstalten. Die Recherche- und Testergebnisse zu Desinfektionsmittelwirkstoffen und -produkten wurden in einer vom IFZ konzipierten und von der Magistratsabteilung 14 realisierten Datenbank zusammengefasst. Um die ökotoxikologischen Produkteigenschaften vergleichbar zu machen, wurde vom IFZ ein Bewertungsraster entwickelt und in die Datenbank integriert. Dabei werden nachteilige Wirkungen auf die Gesundheit anhand von vier Wirkungskategorien erfasst: Akute Giftigkeit; Reizwirkung auf die Haut; Sensibilisierung, allergenes Potenzial sowie Erbgutschädigende, krebserzeugende und fruchtschädigende Eigenschaften. Zusammen mit der Berücksichtigung des Verhaltens in Oberflächengewässern (Abbauverhalten, Bioakkumulationspotenzial, Toxizität für Wasserorganismen) sowie dem Verhalten in Kläranlagen werden insgesamt sechs Bewertungszahlen generiert, die auf einer Skala von 1 (vernachlässigbar) bis 5 (sehr hoch) das gesamte Gefährdungsprofil des Stoffes beschreiben sollen. Das Gefährdungsprofil eines Handelsproduktes errechnet sich aus den Gefährdungsprofilen der darin enthaltenen Wirkstoffe anhand eines Algorithmus: Dabei wird die Annahme getroffen, dass die Produkteigenschaften von der Konzentration der darin enthaltenen Wirkstoffe abhängen. Bei der Bewertung ist außerdem zu gewährleisten, dass ein Wirkstoff mit einem hohen Gefährdungspotenzial angemessen berücksichtigt wird, auch und gerade wenn seine Konzentration im Produkt gering ist. In der Literatur wird dazu eine logarithmische Skalierung vorgeschlagen. Die Bewertung berücksichtigt derzeit die Wirkstoffe sowie Anwendungsverdünnungen. Die Zusammenfassung der Produkte in Verwendungs- bzw. Expositionskategorien ermöglicht letztlich eine vergleichende Bewertung. Da das Bewertungsraster gerade auf eine vergleichende Bewertung von Produkten abzielt, unterliegt er einer ständigen kritischen Diskussion, die auch häufig von den Herstellern geführt wird. Dieser Umstand sowie das Faktum von Produktlebenszyklen erfordern ein ständiges Update der in der Datenbank enthaltenen Informationen und eine Anpassung des Bewertungsmodells an den aktuellen Stand von Forschung sowie Standards der Stoff- und Produktpolitik.

Unraveling the genetic architecture of winter hardiness and quality traits in durum by genome wide and canidate gene based association mapping

Durum wheat is mainly grown as a summer crop. An introduction of a winter form failed until now due to the difficulty to combine winter hardiness with required process quality. Winter hardiness is a complex trait, but in most regions the frost tolerance is decisive. Thereby a major QTL, which was found in T. monococcum, T.aestivum, H. vulgare and S.cereale on chromosome 5, seems especially important. With genotyping by sequencing it is now possible to make association mapping based on very high dense marker maps, which delivers new possibilities to detect main and epistatic effects. Furthermore, new sequencing techniques allow candidate gene based association mapping. The main aim of the project is to unravel the genetic architecture of frost tolerance and quality traits in durum. Thereby, the objectives are to (1) determine the genetic variance, heritability and correlations among frost tolerance and quality traits, (2) examine linkage disequilibrium and population structure, (3) investigate sequence polymorphism at candidate genes for frost tolerance, and (4) perform candidate gene based and genome wide association mapping.

Forschergruppe (FOR) 456 degree of celsius: The role of Biodiversity for element cycling and trophic interactions: An experimental approach in a grassland community, Teilprojekt Decomposers: Decomposer - interaction webs and the effect of belowground biota for ecosystem processes - JenaExp

The soil fauna affects soil structure, nutrient mineralization, decomposition processes, and the activity and composition of the microbial community in soil. These effects likely also modify plant performance, plant competition and the use of plant tissue by above-ground herbivores. The proposed project investigates effects of earthworms and soil insects on the above-ground system in grassland communities of different diversity. Earthworm and soil insect density is manipulated in experimental plots differing in plant diversity. The manipulations include the combined exclusion of below-ground insects and above-ground herbivores. It is expected that the response of the above-ground plant and animal community to manipulations of soil animal populations depends on plant species, plant diversity and plant functional group. The differential response is expected to propagate into the herbivore system thereby affecting the structure of the above-ground animal community.

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