Agriculture is the major contributor of nitrogen to ecosystems, both by organic and inorganic fertilizers. Percolation of nitrate to groundwater and further transport to surface waters is assumed to be one of the major pathways in the fate of this nitrogen. The quantification of groundwater and associated nitrate flux to streams is still challenging. In particular because we lack understanding of the spatial distribution and temporal variability of groundwater and associated NO3- fluxes. In this preliminary study we will focus on the identification and quantification of groundwater and associated nitrate fluxes by combining high resolution distributed fiber-optic temperature sensing (DTS) with in situ UV photometry (ProPS). DTS is a new technique that is capable to measure temperature over distances of km with a spatial resolution of ca1 m and an accuracy of 0.01 K. It has been applied successfully to identify and quantify sources of groundwater discharge to streams. ProPS is a submersible UV process photometer, which uses high precision spectral analyses to provide single substance concentrations, in our case NO3-, at minute intervals and a detection limit of less than 0.05 mg l-1 (ca.0.01 mg NO3--Nl-1). We will conduct field experiments using artificial point sources of lateral inflow to test DTS and ProPS based quantification approaches and estimate their uncertainty. The selected study area is the Schwingbach catchment in Hessen, Germany, which has a good monitoring infrastructure. Preliminary research on hydrological fluxes and field observations indicate that the catchment favors the intended study.
The sorption of anions in geotechnical multibarrier systems of planned high level waste repositories (HLWR) and of non-ionic and organic pollutants in conventional waste disposals are in the center of recent research. In aquatic systems, persistent radionuclides such as 79Se, 99Tc, 129I exist in a form of anions. There is strongly increasing need to find materials with high sorption capacities for such pollutants. Specific requirements on barrier materials are long-term stability of adsorbent under various conditions such as T > 100 C, varying hydrostatic pressure, and the presence of competing ions. Organo-clays are capable to sorb high amounts of cations, anions and non-polar molecules simultaneously having selectivity for certain ions. This project is proposed to improve the understanding of sorption and desorption processes in organo-clays. Additionally, the modification of material properties under varying chemical and thermal conditions will be determined by performing diffusion and advection experiments. Changes by sorption and diffusion will be analyzed by determining surface charge and contact angles. Molecular simulations on models of organo-clays will be conducted in an accord with experiments with aim to understand and analyze experimental results. The computational part of the project will profit from the collaboration of German partner with the group in Vienna, which has a long standing experience in a modeling of clay minerals.
Shallow groundwater of the huge deltaic systems of Asia like the Red River Delta in Vietnam is often enriched in inorganic arsenic (As), threatening the health of millions of residents. The massive abstraction of groundwater in these areas locally causes an irreversible mixing of arsenic-free groundwater resources with arsenic-rich groundwater. Increased concentrations of competitive anions, especially phosphate (PO43-), decrease the immobilization capacity of the sediments. During transport, the mobility of dissolved As in local aquifers is strongly influenced by adsorption to sedimentary and ubiquitously occurring iron(oxyhydr)oxides. Additionally, arsenic-rich groundwater is often enriched in reduced iron (Fe2+) as well, which is capable to react with iron(oxyhydr)oxides, thereby inducing mineral transformations. Such transformations permanently affect the arsenic adsorption and immobilization capacity of the sediments.Within the scope of this research project, the underlying mechanisms related to As transport and the resulting threat to arsenic-free groundwater resources will be characterized in cooperation with the Swiss Federal Institute of Aquatic Science and Technology (Eawag). The research concept aims at assessing the complex interactions within the arsenic-iron-phosphate-system under field conditions at a study site next to the Red River. First, filtration experiments using local groundwater enriched in As and PO43- will be used to determine the As adsorption capacity of different and previously geochemically characterized iron(oxyhydr)oxides. In a second step, sample carrier containing As loaded iron(oxyhydr)oxides will be introduced into surface near aquifer parts of the study site (via existing groundwater monitoring wells). These samples will be exposed to local groundwater characterized by increased As, Fe2+ and PO43- concentrations for the following nine months. Using the in situ exposition of predefined iron(oxyhydr)oxides, it will be possible to distinguish potential mineral transformations and their influences on the As immobilization capacity of the respective iron(oxyhydr)oxides. By combining the results and outcomes of the field experiments, new and important conclusions regarding the mobility of As can be drawn. The data can be used to create a hydrochemical transport model describing reactive As transport within the investigation area. In addition, the results of the in situ exposition experiments will allow to draw conclusions in respective to the long term As immobilization capacity of different iron(oxyhydr)oxides, which is an essential information regarding in situ decontamination techniques.
The objectives are to: (i) improve our understanding of human activities impacts (cumulative, synergistic, antagonistic) and variations due to climate change on marine biodiversity, using long-term series (pelagic and benthic). This objective will identify the barriers and bottlenecks (socio-economic and legislative) that prevent the GES being achieved (ii) test the indicators proposed by the EC, and develop new ones for assessment at species, habitats and ecosystems level, for the status classification of marine waters, integrating the indicators into a unified assessment of the biodiversity and the cost-effective implementation of the indicators (i.e. by defining monitoring and assessment strategies). This objective will allow for the adaptive management including (a) strategies & measures, (b) the role of industry and relevant stakeholders (including non-EU countries), and (c) provide an economic assessment of the consequences of the management practices proposed. It will build on the extensive work carried out by the Regional Seas Conventions (RSC) and Water Framework Directive, in which most of the partners have been involved (iii) develop/test/validate innovative integrative modelling tools to further strengthen our understanding of ecosystem and biodiversity changes (space & time); such tools can be used by statutory bodies, SMEs and marine research institutes to monitor biodiversity, applying both empirical and automatic data acquisition. This objective will demonstrate the utility of innovative monitoring systems capable of efficiently providing data on a range of parameters (including those from non-EU countries), used as indicators of GES, and for the integration of the information into a unique assessment The consortium has 23 partners, including 4 SMEs (close to 17Prozent of the requested budget) and 2 non-EU partners (Ukraine & Saudi Arabia). Moreover, an Advisory Board (RSC & scientific international scientists) has been designed,to ensure a good relationship with stakeholders.
Degradation of the soil productivity due to salt accumulation (salinization) is a major concern in arid, semi-arid and coastal regions. Soil salinization is an old issue but encouraged irrigation practices have been rapidly increasing its intensity and magnitude in the past few decades. Studies have shown that excess of the irrigated water contributes significantly to evaporation from the bare soil surface and therefore to the salinization. In some parts of the world soil salinity has grown so acute that the agricultural lands have been abandoned. Evaporation salinization is mainly influenced by interaction between the flow and transport processes in the atmosphere and the porous-medium. On the atmosphere side, wind velocity, air temperature and radiation have a strong impact on evaporation. Furthermore, turbulence causes air mixing, influences the vapor transport and creates a boundary layer at the soil-atmosphere interface which indeed influences evaporation. On the porous-medium side, dissolved salt is transported under the influence of viscous forces, capillary forces, gravitational forces and advective and diffusive fluxes. The water either directly evaporates from the water-filled pores or it is transported to air due to diffusive processes. Continuous evaporation promotes salt accumulation and precipitation resulting in soil salinization. In the scope of this work we attempt to develop a model concept capable of handling flow, transport and precipitation processes related to evaporative salinization of an unsaturated porous-medium.
The development of new pharmaceutical compounds will be more efficient if human relevant toxicology information early in the selection process is available. While acute toxicity can be reasonably detected during the early preclinical stages of drug development, long-term toxicity is more difficult to predict, relying almost exclusively on animal experiments Animal experimentation of this kind is expensive and time consuming, raises ethical issues and do not necessarily represent a toxicological relevance to man. This project address the urgent need to develop in vitro based systems which are capable of predicting long term toxicity in humans. The major objectives of this project are:1)To develop advanced cell culture systems which as best possible represents the human liver and kidney in vivo. This will be achieved using combined strategies namely:co-cultures of resident cell types,targeted cell transformation,stem cell technology and new developments in organotypic cell culture (i.e. perfusion cultures and 3D cultures).2)To identify specific early mechanistic markers of toxin induced cell alterations by using integrated genomic,proteomic and cytomic analysis.3)To establish and prevalidate a screening platform (cell systems together with analysis tools) which is unambiguously predictive of toxin induced chronic renal and hepatic disease.This proposal is unique in it's mechanistic integration of the three levels of cellular dynamics (genome, proteome and cytome) together with advanced cell culture technology to detect early events of cellular injury. Only with such an integrated approach will in vitro techniques ever be applicable to predicting chronic toxicity in man. This project,if successful will(1) contribute to the replacement of animal testing in drug development, (2) increase ... Prime Contractor: Fundacion Hospital Universitario 'La Fe', Experimental Hepatology Unit, Research Center; Valencia; Espana.
Monitoring the quality of drinking water is of paramount importance for public health. 'Water is not a commercial product but a heritage that must be protected, defended and treated as such' (Water Framework Directive 2000/60/EC). The threat of waterborne diseases in Europe will predictably increase in the future as the human population increases and as a result of globalization and migration from non-EU countries and of climate change. Development of efficient, sensitive, robust, rapid and inexpensive tests to monitor various aspects of water quality represents an essential milestone within the strategy for control and prevention of diseases caused by waterborne pathogens and by algal toxins. Traditional methods for the detection of waterborne pathogens, based on cultivation, biochemical characterisation and microscopic detection are laborious and time-consuming; molecular biological tools have now greatly enhanced our ability to investigate biodiversity by identifying species and to estimate gene flow and distribution of species in time and space. My AQUA aims to design and develop a universal microarray chip for the high-throughput detection in water of known and emerging pathogens (bacteria, viruses, protozoa and cyanobacteria) and to assess the water quality monitoring the presence of select bioindicators (i.e. diatoms). A chip able to detect cyanobacterial toxins will also be developed. These innovative molecular tools should be amenable to automation so that they could be deployed on moorings for routine semi-continuous monitoring of water quality. My AQUA also aims to identify cyanophages potentially capable of controlling and mitigating the periodical blooming of toxic cyanobacteria in drinking water reservoirs. Overall, these innovative and cost efficient technologies will reduce energy requirements and improve performance of water treatment, and allow rapid management response to new situations brought about by environmental (including climatic) changes.
In nature most plants are resistant to most pathogens and disease is rather the exception than the rule. A key aspect of this phenomenon is a resistance response called 'innate immunity'. It is based on the host recognition of characteristic microbial molecules, known as MAMPs (Microbe Associated Molecular Patterns), by specific receptors called pattern recognition receptors (PRRs). A paradigm of a MAMP is flagellin, the main building unit of the mobility organ of bacteria. Bacterial flagellin is perceived by the pattern recognition receptor FLS2 (FLagellin Sensing 2) at the surface of plant cells. Binding of flagellin to FLS2 on the outside of the cells induces a set of physiological responses inside the cells, which we can easily measure in our lab and which ultimately contribute to limitation of bacterial invasion and plant resistance. Our lab has focused in the last years in understanding how FLS2, a single pass transmembrane molecule, functions to transmit the signal from outside of the cell to its inside. We could demonstrate that upon stimulation with flagellin, FLS2 associates very quickly at the plasma membrane with a second receptor known as BAK1 (BRI1-Associated Kinase 1). This was initially a big surprise because BAK1 was already known as the co-receptor of the BRI1, a plant hormone receptor which regulates plant development but not plant immunity. More recently we developed an original biochemical approach to label and detect phosphorylated receptors in cell cultures in vivo. This allowed us to show that the transmission of the flagellin signal occurs via phosphorylation of FLS2 and BAK1 within seconds after flagellin perception. In addition we could show that BAK1 is capable of regulating several PRRs other than FLS2 by forming stable complexes. Thus BAK1 appears to be a crucial regulator or plant immunity in addition to its role in plant development. Our recent progress on the plants' flagellin-sensing system was mostly obtained using Arabidopsis as plant model. In view of the ability of BAK1 to form stable complexes with PRRs in a ligand-dependent manner, we are now interested to fish out and identify new PRRs, notably from crop species, using a proteomic approach. The identification of more PRRs in different plants is a very important step toward understanding plant innate immunity. In more general terms, better knowledge about innate immunity is crucial because it may reveal new strategies to fight the devastating impact of some plant diseases.
Lakes can be considered as sentinels and thus indicators and integrators of environmental pressures such as climate change. To maintain lakes in a healthy ecological state is nowadays a major task for water management authorities, and will be increasingly so under climate change which is believed to negatively affect lake ecosystem functioning. Phytoplankton plays a key role in lake dynamics as it is at the base of the food web, and changes in its community have potential to affect the entire lake ecosystem. In addition, Cyanobacteria, the only freshwater phytoplankton group that is able to produce cyanotoxins, are capable of inflicting considerable harm to lake ecosystems and to human health through contamination of drinking water supply and toxin accumulation in fishes. Phytoplankton is thus a common indicator to assess the ecological status of lakes. Without understanding the complex mechanisms and processes that underlay a lake ecosystem in a changing climate, planning for future lake management and adaptation will be compromised. Numerical deterministic modelling is today the most appropriate approach to address these global and complex mechanistic features of lake ecosystems. Modeling studies play a key role in exploring the processes responsible for changes since they can be used to test the sensitivity of lakes to both observed and projected changes in climate. The aim of this project is to apply an ecological model to Lake Geneva, which has not been undertaken yet. Lake Geneva, a deep sub-Alpine lake, is the largest lake in central Europe and an essential source of drinking water, having not only a high ecological value, but also economic and social values. Due to its considerable environmental importance, it is crucial to assess, through numerical modeling techniques applied, how the Lakes water quality may be impaired; especially in view of the fact the observed rate of warming since 1900 is more than double that of the observed global average. Moreover, the hydrodynamic characteristics of Lake Geneva, the watershed of its most important inflow river Rhône, as well as the regional climate, have already been modeled. In coupling these models together, we will close the essential gaps, through which we will be able to understand the links between climate, watersheds, and lakes and provide a whole, integrated ecosystem perspective. This integrative model will provide an accurate predictive management tool to help take decisions and response strategies in a timely manner. It is generally recognized that future climate change will have an important impact on Lake Geneva, with a likely deterioration of its water quality. This will be manifested by high phosphorus concentrations, by phytoplankton biomass increase, by a change in phytoplankton composition, by an asynchronous phenology and by an emergence of potentially toxic Cyanobacteria.(...)
The major aim of CARCINOGENOMICS is to develop in vitro methods for assessing the carcinogenic potential of compounds, as an alternative to current rodent bioassays for genotoxicity and carcinogenicity. The major goal is to develop a battery of mechanism-based in vitro tests accounting for various modes of carcinogenic action. These tests will be designed to cover major target organs for carcinogenic action e.g. the liver, the lung, and the kidney. The novel assays will be based on the application of 'omics' technologies (i.e. genome-wide transcriptomics as well as metabonomics) to robust in vitro systems (rat/human), thereby also exploring stem cell technology, to generate 'omic' responses from a well-defined set of model compounds causing genotoxicity and carcinogenicity. Phenotypic markers for genotoxic and carcinogenic events will be assessed for the purpose of anchoring gene expression modulations, metabolic profiles and mechanism pathways. Through extensive biostatistics, literature mining, and analysis of molecular-expression datasets, differential genetic pathways will be identified capable of predicting mechanisms of chemical carcinogenesis in vivo. Furthermore, generated transcriptomic and metabonomic data will be integrated into a holistic understanding of systems biology, and applied to build an iterative in silico model of chemical carcinogenesis. Subsequently, predictive gene expression profiles, typically consisting of some 150-250 genes, will be loaded onto high throughput dedicated DNA-chips, thus accelerating the analysis of transcriptomic responses by a factor of 100. It is expected that the outcome of this project will generate a platform enabling the investigation of large numbers of compounds for their genotoxic and carcinogenic potential, as envisaged under the REACH initiative. This will contribute to speeding the identification of potential harmful substances to man, while lowering costs and reducing animal tests. Prime Contractor: Maastricht, University, Health Risk Analysis and Toxicology (Grat); Maastricht, Nederland.
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