Fusarium species of the Gibberella fujikuroi species complex cause serious diseases on different crops such as rice, wheat and maize. An important group of plant pathogens is the Gibberella fujikuroi species complex (GFC) of closely related Fusarium species which are associated with specific hosts; F. verticillioides and F. proliferatum are particularly associated with maize where they can cause serious ear-, root-, and stalk rot diseases. Two other closely related species of the GFC, F. mangiferae and F. fujikuroi, which share about 90Prozent sequence identity with F. verticillioides, are pathogens on mango and rice, respectively. All of these species produce a broad spectrum of secondary metabolites such as phytohormones (gibberellins, auxins, and cytokinins), and harmful mycotoxins, such as fumonisin, fusarin C, or fusaric acid in large quantities. However, the spectrum of those mycotoxins might differ between closely related species suggesting that secondary metabolites might be determinants for host specificity. In this project, we will study the potential impact of secondary metabolites (i.e. phytohormones and certain mycotoxins) and some other species-specific factors (e.g. species-specific transcription factors) on host specificity. The recently sequenced genomes of F. mangiferae and F. fujikuroi by our groups and the planned sequencing of F. proliferatum will help to identify such determinants by genetic manipulation of the appropriate metabolic pathway(s).
Die erste Antragsphase war auf die Bildungsraten und die Speicherung von anthropogenem Kohlenstoff (Cant) im Antarktischen Zwischenwasser (AAIW) fokussiert. Mit Hilfe von Freon (CFC) Daten konnten wir eine signifikante Reduktion der AAIW Bildungsrate von den 1990ern zu den 2000ern Jahren feststellen. Dies führte zu einer geringeren Steigerung der Cant Speicherung als vom atmosphärischen Cant Anstieg und einem unveränderten Ozean zu erwarten war. Um den Schwierigkeiten mit den Randbedingungen auszuweichen (Pazifisches AAIW strömt über die Drake Passage auch in den Atlantik und weiter in den Indischen Ozean) planen wir nun ein globales Vorgehen um in allen Ozeanen die Bildungsraten und Cant Speicherungen in den Zwischen- Tiefen- und Bodenwassermassen zu berechnen. Darüber hinaus wird der Zeitraum bis 2015 ausgedehnt, und wo immer die Datenlage es zulässt, Pentaden- anstatt Dekadenmittelwerte gebildet. Verwendet wird der aktualisierte GlODAPv2 Datensatz und eigene Daten.Die Berechnungen aus den Beobachtungen werden mit den Ergebnissen eines wirbelauflösenden globalen Ozeanmodells (1/10 Grad) kombiniert. Das POP Modell (Los Alamos Laboratory Parallel Ocean Program) mit eines horizontalen Auflösung von 0.1 Grad und 42 Tiefenstufen wird für die letzten 20 Jahre mit einem realistischen Forcing angetrieben und enthält außerdem die Freone als Tracer. Neben dem Vergleich mit einem klimatologischen Antrieb wird das Modell zur Weiterentwicklung der Tracer-Methode verwendet wir z.B. die Unsicherheit von zu wenig Datenpunkten und der Extrpolationsroutine auf die Bildungsraten / Cant Speicherungen. Ein weiterer wichtiger Punkt wird die Bestimmung der TTDs aus Lagrange Trajektorien und der Vergleich mit TTDs aus Tracermessungen sein, sowie die Untersuchung der Rolle der Wirbel, der Vermischung durch Wirbel und der vertikalen Vermischung.
Soil structure determines a large part of the spatial heterogeneity in water storage and fluxes from the plot to the hillslope scale. In recent decades important progress in hydrological research has been achieved by including soil structure in hydrological models. One of the main problems herein remains the difficulty of measuring soil structure and quantifying its influence on hydrological processes. As soil structure is very often of biogenic origin (macropores), the main objective of this project is to use the influence of bioactivity and resulting soil structures to describe and support modelling of hydrological processes at different scales. Therefore, local scale bioactivity will be linked to local infiltration patterns under varying catchment conditions. At hillslope scale, the spatial distribution of bioactivity patterns will be linked to connectivity of subsurface structures to explain subsurface stormflow generation. Then we will apply species distribution modelling of key organisms in order to extrapolate the gained knowledge to the catchment scale. As on one hand, bioactivity influences the hydrological processes, but on the other hand the species distribution also depends on soil moisture contents, including the feedbacks between bioactivity and soil hydrology is pivotal for getting reliable predictions of catchment scale hydrological behavior under land use change and climate change.
This project is aimed at the characterization of the systemic reprogramming in barley, which modulates the compatible interaction with the biotrophic leaf pathogen Blumeria graminis f.sp. hordei upon root infestation with the mutualistic endophyte Piriformospora indica. We have recently shown that the basidiomycete P. indica - upon successful establishment in the roots - reprograms barley to salt stress tolerance, resistance to root diseases and higher yield (Waller et al., 2005). Successful powdery mildew infections in barley leaves are also disturbed by the mutualistic fungus. These processes are associated with a strong change in plant metabolism, especially with a drastic alteration of leaf and root antioxidants. On the basis of these findings we will perform an in-depth analysis of the barley metabolome (B6) and transcriptome (B7) with two specific foci: First, to elucidate the process of establishment of the mutualistic fungus within the barley roots; second, to characterize elements of the systemic response in leaves leading to an interruption or failure of compatibility processes required for successful establishment of biotrophic leaf pathogens like Blumeria. New gene candidates will be pre-selected systematically for their regulatory role in compatibility by means of transiently transformed barley leaves upon Blumeria inoculation. Stable transgenic barley and maize lines (B3) generated with verified gene candidates and genes identified by other projects (A1, A2, B5, B6) will be tested with Blumeria and P. indica. By comparing candidate genes in the different plant - microbe systems, we will identify common regulatory processes, metabolites and metabolic networks implicated in compatibility including those required for successful interactions with mutualistic fungi.
Bamboos (Poaceae) are widespread in tropical and subtropical forests. Particularly in Asia, bamboos are cultivated by smallholders and increasingly in large plantations. In contrast to trees, reliable assessments of water use characteristics for bamboo are very scarce. Recently we tested a set of methods for assessing bamboo water use and obtained first results. Objectives of the proposed project are (1) to further test and develop the methods, (2) to compare the water use of different bamboo species, (3) to analyze the water use to bamboo size relationship across species, and (4) to assess effects of bamboo culm density on the stand-level transpiration. The study shall be conducted in South China where bamboos are very abundant. It is planned to work in a common garden (method testing), a botanical garden (species comparison, water use to size relationship), and on-farm (effects of culm density). Method testing will include a variety of approaches (thermal dissipation probes, stem heat balance, deuterium tracing and gravimetry), whereas subsequent steps will be based on thermal methods. The results may contribute to an improved understanding of bamboo water use characteristics and a more appropriate management of bamboo with respect to water resources.
Background: An increasing frequency of massive flooding along the lower Yangtse River in China ended in a disastrous catastrophe in summer 1998 leaving several thousand people homeless, more than 3.600 dead and causing enormous economic damage. Inappropriate land-use techniques and large scale timber felling in the water catchment of the upper Yangtse and its feeder streams were stated to be the main causes. Immediate timber cutting bans were imposed and investigations on land use patterns were initiated by the Chinese Government. The Institute for World Forestry of the Federal Research Centre for Forestry and Forest Products was approached by the Yunnan Academy of Forestry in Kunming to exchange experiences and to cooperate scientifically in the design and application of appropriate afforestation and silvicultural management techniques in the water catchment area of the Yangtse. This cooperation was initiated in 1999 and is based on formal agreements in the fields of agrarian research between the German and Chinese Governments. Objectives: The cooperation was in the first step focussing on the identification of factors which caused the enormous floodings. After their identification measures of prevention were determined and put into practice. In this context experiences made in past centuries in the alpine region of central Europe served as an incentive and example for similar environmental problems and solutions under comparable conditions. Relevant key questions of the cooperation project were: - Analysis of forest related factors influencing the recent floodings of the Yangtse, - Analysis and evaluation of silvicultural management experiences from central Europe for know-how transfer, - Evaluation of rehabilitation measures for successful application in Yunnan, - Dissemination of knowledge through vocational training. Results: - Frequent wild grazing of husbandry is a key factor for forest degeneration beyond unsustainable timber harvests, forest fires and insect calamities leading to increased water run-off in the mountainous region of Yunnan; - Browsing of cattle interrupts succession thus avoiding natural regeneration and leaving a logging ban ineffective; - Mountain pasture in the Alps had similar effects in the past in central Europe. The introduction of controlled grazing has led to an ecologically compatible coexistence of pasture and ecology. Close-to-nature forestry can have positive effects in this sensitive environment. - Afforestation with site adopted broadleaves and coniferous tree species was implemented on demonstration level using advanced techniques in Yunnan.
The present-day configuration of Indonesia and SE Asia is the results of a long history of tectonic movements, volcanisms and global eustatic sea-level changes. Not indifferent to these dynamics, fauna and flora have been evolving and dispersing following a complicate pattern of continent-sea changes to form what are today defined as Sundaland and Wallacea biogeographical regions. The modern intraannual climate of Indonesia is generally described as tropical, seasonally wet with seasonal reversals of prevailing low-level winds (Asian-Australian monsoon). However at the interannual scale a range of influences operating over varying time scales affect the local climate in respect of temporal and spatial distribution of rainfall. Vegetation generally reflects climate and to simplify it is possible to distinguish three main ecological elements in the flora of Malaysia: everwet tropical, seasonally dry tropical (monsoon) and montane. Within those major ecological groups, a wide range of specific local conditions caused a complex biogeography which has and still attract the attention of botanists and biogeographers worldwide. Being one of the richest regions in the Worlds in terms of species endemism and biodiversity, Indonesia has recently gone through intensive transformation of previously rural/natural lands for intensive agriculture (oil palm, rubber, cocoa plantations and rice fields). Climate change represents an additional stress. Projected climate changes in the region include strengthening of monsoon circulation and increase in the frequency and magnitude of extreme rainfall and drought events. The ecological consequences of these scenarios are hard to predict. Within the context of sustainable management of conservation areas and agro-landscapes, Holocene palaeoecological and palynological studies provide a valuable contribution by showing how the natural vegetation present at the location has changed as a consequence of climate variability in the long-term (e.g. the Mid-Holocene moisture maximum, the modern ENSO onset, Little Ice Age etc.). The final aim of my PhD research is to compare the Holocene history of Jambi province and Central Sulawesi. In particular: - Reconstructing past vegetation, plant diversity and climate dynamics in the two study areas Jambi (Sumatra) and Lore Lindu National Park (Sulawesi) - Comparing the ecological responses of lowland monsoon swampy rainforest (Sumatra) and everwet montane rainforests (Sulawesi) to environmental variability (vulnerability/resilience) - Investigating the history of human impact on the landscape (shifting cultivation, slash and burn, crop cultivation, rubber and palm oil plantation) - Assessing the impact and role of droughts (El Niño) and fires - Adding a historical perspective to the evaluation of current and future changes.
In subsoils, organic matter (SOM) concentrations and microbial densities are much lower than in topsoils and most likely highly heterogeneously distributed. We therefore hypothesize, that the spatial separation between consumers (microorganisms) and their substrates (SOM) is an important limiting factor for carbon turnover in subsoils. Further, we expect microbial activity to occur mainly in few hot spots, such as the rhizosphere or flow paths where fresh substrate inputs are rapidly mineralized. In a first step, the spatial distribution of enzyme and microbial activities in top- and subsoils will be determined in order to identify hot spots and relate this to apparent 14C age, SOM composition, microbial community composition and soil properties, as determined by the other projects within the research unit. In a further step it will be determined, if microbial activity and SOM turnover is limited by substrate availability in spatially distinct soil microsites. By relating this data to root distribution and preferential flow paths we will contribute to the understanding of stabilizing and destabilizing processes of subsoil organic matter. As it is unclear, at which spatial scale these differentiating processes are effective, the analysis of spatial variability will cover the dm to the mm scale. As spatial segregation between consumers and substrates will depend on the pore and aggregate architecture of the soil, the role of the physical integrity of these structures on SOM turnover will also be investigated in laboratory experiments.
In freshwater sediments, iron oxidation is dominated by phototrophic and chemotrophic (aerobic and nitrate-reducing) Fe(ll)-oxidizing microorganisms. Although these biogeochemical processes have been investigated in detail in laboratory studies, not much is known about their spatial distribution, interactions (e.g. competition) amongst each other, as well as their response towards environmental perturbations (i.e. temperature, geochemical variations (nutrient, organic matter input)). This research proposal aims to investigate the activity, abundance and resource competition between different chemotrophic (aerobic and (autotrophic/mixotrophic) anaerobic nitrate-reducing) and phototrophic ironoxidizing microorganisms. In order to better understand the spatial distribution of nitrate-reducing iron oxidizing bacteria, microbial nitrate-producing and competing, nitrate-depletion processes will also be studied throughout the sedimentary redox gradient. In addition, the activity and abundance of the ironoxidizing processes will be quantified with (geo)microbiological, molecular and novel spectral imaging techniques. Using high resolution geochemical measurements (microsensors) we will characterize the environmental conditions these bacteria experience in order to determine the role of spatial and functional niche competition in microbial iron oxidation and the interconnection to the N-cycle. Iron mineral formation will be investigated as a function of the microbial spatial and temporal activity, depending on environmental perturbations. The proposed research study will strongly improve the understanding of iron cycling, the interconnection to the N-cycle, as well as interactions and competition between phototrophic and chemotrophic metabolisms in aquatic environments.
Sekundäre Partikelneubildung ist eine Hauptquelle für atmosphärische Partikel mit wichtigen Folgen für das Klima und die menschliche Gesundheit. Dieses Vorhaben untersucht die Rolle von Luft Ionen bei der sekundären Partikelneubildung in Flussreaktor- und Aerosolkammer-Experimenten unter kontrollierten Laborbedingungen. Trotz beträchtlicher Fortschritte in der Messtechnik zur Untersuchung der atmosphärischen Nukleation und des Partikelwachstums bestehen weiterhin Verständnislücken hinsichtlich der grundlegenden physikalischen und chemischen Prozesse. Insbesondere die möglichen Effekte von Ionen-Partikel-Wechselwirkungen und von Ionenchemie auf die Partikelneubildung werden kontrovers diskutiert. In Ergänzung zu bestehenden Forschungsprogrammen hinsichtlich der Rolle von Ionen im initialen Nukleationsschritt wird vorgeschlagen, Ionen-Partikel-Wechselwirkungen während des anschließenden Partikelwachstums zu untersuchen und sich dabei auf direkte Messungen des Ladungszustands, der Wachstumsraten und der chemischen Zusammensetzung von sekundärem organischem Aerosol zu konzentrieren. Hierzu werden der Ladungszustand und die Wachstumsraten von Partikelpopulationen mit einem modifizierten Mobilitätspartikelspektrometer unter wohldefinierten Randbedingungen in Laborexperimenten quantifiziert. In einem nächsten Schritt werden die neuartigen Messmöglichkeiten unseres Aerosol-Massenspektrometers CAChUP voll ausgeschöpft, um den Beitrag verschiedener organischer Vorläufergase zur chemischen Zusammensetzung von sekundärem organischen Aerosol bei variierenden Ladungszuständen zu quantifizieren. Schließlich werden die Ergebnisse dieser Experimente durch Messungen zur sekundären organischen Partikelbildung bei wohldefinierten Ionenkonzentrationen an einer Aerosolkammer überprüft. Die vorgeschlagene Forschungsagenda ist somit darauf abgestimmt, mögliche ladungs-katalysierte chemische Mechanismen bei der sekundären Aerosolbildung besser einzuordnen.
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