In today's biodiversity crisis, there is an urgent need to monitor terrestrial and aquatic species in their natural habitats, especially those that may be endangered, invasive or elusive. Traditional species observation methods, based on acoustic or observational surveys are inefficient, costly and time consuming. On the other hand, DNA is continuously deposited in the environment from natural processes and this environmental DNA (eDNA) allows us to detect species and reconstruct their communities with a high level of sensitivity. These data can be used to obtain occurrence records and to collect more population information in field. Crucially, these data are necessary to inform management agencies about the current state of our biodiversity, and are especially urgent for species that are currently data deficient. The aims of this study are to firstly identify occurrence records from diverse sources (databases, literature) and generate a database of distributional data for species of crustacean and mollusks that are data deficient in Sweden. Secondly, we aim to detect threatened species in Swedish marine, freshwater and terrestrial habitats using novel genomic methods (DNA metabarcoding, ddPCR). Finally, based on the new data, we will run species distribution and population models, to improve information on geographic range and population status for threatened invertebrates. The results will be integrated into current monitoring programmes (e.g. red-listing) and action plans.
Subproject 3 will investigate the effect of shifting from continuously flooded rice cropping to crop rotation (including non-flooded systems) and diversified crops on the soil fauna communities and associated ecosystem functions. In both flooded and non-flooded systems, functional groups with a major impact on soil functions will be identified and their response to changing management regimes as well as their re-colonization capability after crop rotation will be quantified. Soil functions corresponding to specific functional groups, i.e. biogenic structural damage of the puddle layer, water loss and nutrient leaching, will be determined by correlating soil fauna data with soil service data of SP4, SP5 and SP7 and with data collected within this subproject (SP3). In addition to the field data acquired directly at the IRRI, microcosm experiments covering the broader range of environmental conditions expected under future climate conditions will be set up to determine the compositional and functional robustness of major components of the local soil fauna. Food webs will be modeled based on the soil animal data available to gain a thorough understanding of i) the factors shaping biological communities in rice cropping systems, and ii) C- and N-flow mediated by soil communities in rice fields. Advanced statistical modeling for quantification of species - environment relationships integrating all data subsets will specify the impact of crop diversification in rice agro-ecosystems on soil biota and on the related ecosystem services.
Background and Objectives: The project area is located in the Ashanti Region of Ghana / West Africa in the transition zone of the moist semideciduous forest and tropical savannah zone. Main land use in this region is subsistence agriculture with large fallow areas. As an alternative land-use, forest plantations are under development by the Ghanaian wood processing company DuPaul Wood Treatment Ltd. Labourers from the surrounding villages are employed as permanent or casual plantation workers. Within three forest plantation projects of approximately 6,000 ha, DuPaul offers an area of 164 ha (referred to as Papasi Plantation) - which is mainly planted with Teak (Tectona grandis) - for research purposes. In return, the company expects consultations to improve the management for sustainable timber and pole production with exotic and native tree species. Results: In a first research approach, the Papasi Plantation was assessed in terms of vegetation classification, timber resources (in qualitative and quantitative terms) and soil and site conditions. A permanent sampling plot system was established to enable long-term monitoring of stand dynamics including observation of stand response to silvicultural treatments. Site conditions are ideally suited for Teak and some stands show exceptionally good growth performances. However, poor weed management and a lack of fire control and silvicultural management led to high mortality and poor growth performance of some stands, resulting in relative low overall growth averages. In a second step, a social baseline study was carried out in the surrounding villages and identified landowner conflicts between some villagers and DuPaul, which could be one reason for the fire damages. However, the study also revealed a general interest for collaboration in agroforestry on DuPaul land on both sides. Thirdly, a silvicultural management concept was elaborated and an improved integration of the rural population into DuPaul's forest plantation projects is already initiated. If landowner conflicts can be solved, the development of forest plantations can contribute significantly to the economic income of rural households while environmental benefits provide long-term opportunities for sustainable development of the region. Funding: GTZ supported PPP-Measure, Foundation
In bog ecosystems, vegetation controls key processes such as the retention of carbon, water and nutrients. In northern hemispherical bogs, a shift from Sphagnum- to vascular plant-dominated vegetation is often traced back to Climate Change and increased anthropogenic nitrogen deposition and coincides with substantially reduced capacities in carbon, water and nutrient retention. In southern Patagonia, bogs dominated by Sphagnum and vascular plants coexist since millennia under similar environmental settings. Thus, South Patagonian bogs may serve as ideal examples for the long-term effect of vascular plant invasion on carbon, water and nutrient balances of bog ecosystems. The contemporary balances of carbon and water of both a bog dominated by Sphagnum and vascular plants are determined by CO2- H2O and CH4 flux measurements and an estimation of lateral water losses as well as losses via dissolved organic and inorganic carbon compounds. The high time resolution of simultaneous eddy covariance measurements of CO2 and H2O in both bog types and the strong interaction between climatic variables and the physiology of bog plants allow for direct comparisons of carbon and water fluxes during cold, warm, dry, wet, cloudy or sunny periods. By the combination with leaf-scale measurements of gas exchange and fluorescence, plant-physiological controls of photosynthesis and transpiration can be identified. Long-term peat accumulation rates will be determined by carbon density and age-depth profiles including a characterization of peat humification characteristics. A reciprocal transplantation experiment with incorporated shading, liming and labeled N addition treatments is conducted to explore driving factors affecting competition between Sphagnum and vascular plants as well as the interactions between CO2-, CH4-, and water fluxes and decisive plant functional traits affecting key processes for carbon sequestration and nutrient cycling. Decomposition rates and driving below ground processes are analyzed with a litter bag field experiment and an incubation experiment in the laboratory.
In recent years science has taken an increased interest in mineralization processes in tropical soils in particular under minimal tillage operations. Plant litter quality and management strongly affect mineralization-nitrification processes in soil and hence the fate of nitrogen in ecosystems and the environment. Plant secondary metabolites like lignin and polyphenols are poorly degradable and interact with proteins (protein binding capacity) and hence protect them from microbial attack. Nitrification, a microbiological process, directly and indirectly influences the efficiency of recovery of N in the vegetation as well as the loss of N (through denitrification and leaching) causing environmental pollution to water bodies and contributes to global warming (e.g. the greenhouse gas N2O is emitted as a by-product of nitrification and denitrification). Nitrifiers comprise a relatively narrow species diversity (at least as known to date) and are generally thought to be sensitive to low soil pH and stress. Despite these properties nitrification occurs in acid tropical soils with high levels of aluminium and manganese. Thus the main objective of the project will be the identification of micro-organisms and mechanisms responsible for mineralization-nitrification processes in acid tropical soils and the influence of long-term litter input of different chemical qualities and minimal tillage options. The project will include the use of stable isotopes (15N, 13C), mass spectrometry, gas chromatography (CO2, N2O), biochemical methods (PLFA) and molecular biology (16s rRNA., PCR, DGGE)
Increasing population pressure is leading to unsustainable land use in North Vietnamese highlands and destruction of natural habitats. The resulting loss of biodiversity includes plant genetic resources - both wild (= non-cultivated) species and cultivated landraces - adapted to local conditions, and local knowledge concerning the plants. A particularly important group among endangered plants are the legumes (1) because Southeast Asia is a major centre of genetic diversity for this family, and (2) because the potential contribution of legumes to sustainable land use is, due to their multifunctionality (e.g., soil improvement, human and livestock nutrition), especially high. The project aims to contribute to the conservation and sustainable use of genetic resources of legumes with an integrated approach wherein a series of components are combined: (1) A participatory, indigenous knowledge survey complemented by information from the literature; (2) germplasm collection missions (for ex situ conservation) complemented by field evaluation and seed increase; (3) genetic diversity analysis of selected material by molecular markers; and (4) GIS based analysis of generated data to identify areas of particular genetic diversity as a basis for land area planning and in situ preservation recommendations. Project results are expected to be also applicable to similar highlands in Southeast Asia.
Steroid hormones are essential in orchestrating oocyte maturation, i.e. estrogens of follicular origin support the development of the female gamete and fertilization. In this project the concentration of free and conjugated estrogens during follicular development will be analysed and compared to local concentrations in the developing follicle. Cattle are suitable animal models because of the accessibility and suitability for frequent examination and sampling. Furthermore, it has been useful for understanding several features of human reproduction including follicular dynamics, the fate of the emerging follicles is orchestrated mainly by gonadotropins and steroid hormones in a similar manner. Ovarian SULT1E1 participates locally in the regulation of follicular estrogen activity. The ESTcatalysed down-regulation of estrogen activity enables normal ovulation. Conversely, sulfoconjugated estrogens may also be precursors of the production of free estrogens depending on estrogen sulfatase (StS) acitivity. In mammals, follicular luteinisation/ovulation is triggered by a surge in LH and is characterised by numerous physical and biochemical changes, including the decreased production of estradiol (E2). This loss in E2 biosynthetic capacity has been explained by a marked decrease in the expression of key steroidogenic enzymes involved in the follicular production of active estrogens. However, little is known about the regulation of enzymes/proteins responsible for the inactivation and elimination of estrogens, as mediated for example by EST during this period.
Cherry leaf roll virus (CLRV) is a plant pathogen of economic and ecologic importance. It is globally distributed in a wide range of forest, fruit, and ornamental trees and shrubs. In several areas of cherry and walnut production CLRV causes severe losses in yield and quality. With current reference to the rapid dissemination and strong symptom expression in Finnish birches and the Germany-wide distribution of CLRV in birches and elderberry, we continuously investigate and gradually reveal CLRV transmission pathways as by pollen, seeds or water. However, modes and interactions responsible for the wide intergeneric host transmission as well as for the exceptional CLRV epidemic in Fennoscandia still remain unknown. In this project systematic studies shall investigate biological vectors as a causal agent to finally derive control mechanisms and strategies to avoid new epidemics in different hosts and geographic regions. Detailed monitoring of the invertebrate fauna of birch stands/forests and elderberry plantations in Germany and Finland shall reveal potential vectors to subsequently study them in detail by approved virus detection methods and transmission experiments. Molecular analyses of the CLRV coat protein shall prove its role as a viral determinant for a virus/vector interaction. Consequently, this project essentially will contribute important answers on the CLRV epidemiology, and this will be a key element within the first network of research on plant viral pathogens in forest trees.
Irrigation in the Yanqi Basin, Sinkiang, China has led to water table rise and soil salination. A model is used to assess management options. These include more irrigation with groundwater, water saving irrigation techniques and others. The model relies on input data from remote sensing.The Yanqi Basin is located in the north-western Chinese province of Xinjiang.This agriculturally highly productive region is heavily irrigated with water drawn from the Kaidu River. The Kaidu River itself is mainly fed by snow and glacier melt from the Tian Mountain surrounding the basin. A very poor drainage system and an overexploitation of surface water have lead to a series of environmental problems: 1. Seepage water under irrigated fields has raised the groundwater table during the last years, causing strongly increased groundwater evaporation. The salt dissolved in the groundwater accumulates at the soil surface as the groundwater evaporates. This soil salinization leads to degradation of vegetation as well as to a loss of arable farmland. 2. The runoff from the Bostan Lake to the downstream Corridor is limited since large amount of water is used for irrigation in the Yanqi Basin. Nowadays, the runoff is maintained by pumping water from the lake to the river. The environmental and ecological system is facing a serious threat.In order to improve the situation in the Yanqi Basin, a jointly funded cooperation has been set up by the Institute of Environmental Engineering, Swiss Federal Institute of Technology (ETH) , China Institute of Geological and Environmental Monitoring (CIGEM) and Xinjiang Agricultural University. The situation could in principle be improved by using groundwater for irrigation, thus lowering the groundwater table and saving unproductive evaporation. However, this is associated with higher cost as groundwater has to be pumped. The major decision variable to steer the system into a desirable state is thus the ratio of irrigation water pumped from the aquifer and irrigation water drawn from the river. The basis to evaluate the ideal ratio between river and groundwater - applied to irrigation - will be a groundwater model combined with models describing the processes of the unsaturated zone. The project will focus on the following aspects of research: (...)
Deviant behaviour on various levels of the food supply chain may cause food risks. It entails irregular technological procedures which cause (increased probabilities of) adverse outcomes for buyers and consumers. Besides technological hazards and hitherto unknown health threats, moral hazard and malpractice in food businesses represent an additional source of risk which can be termed 'behavioural food risk'. From a regulatory perspective, adverse outcomes associated with deviance represent negative externalities that are caused by the breaking of rules designed to prevent them. From a rational choice perspective, the probability of malpractice increases with the benefits for its authors. It decreases with the probability of detection and resulting losses. It also decreases with bonds to social norms that protect producers from yielding to economic temptations. The design of mechanisms that reduce behavioural risks and prevent malpractice requires an understanding of why food businesses obey or do not obey the rules. This project aims to contribute to a better understanding of malpractice on the restaurant/retail level through comparative case studies and statistical analyses of food inspection and survey data. Accounting for the complexity of economic behaviour, we will not only look at economic incentives but consider all relevant behavioural determinants, including social context factors.
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