Biogeochemical interfaces shape microbial community function in soil. On the other hand microbial communities influence the properties of biogeochemical interfaces. Despite the importance of this interplay, basic understanding of the role of biogeochemical interfaces for microbial performance is still missing. We postulate that biogeochemical interfaces in soil are important for the formation of functional consortia of microorganisms, which are able to shape their own microenvironment and therefore influence the properties of interfaces in soil. Furthermore biogeochemical interfaces act as genetic memory of soils, as they can store DNA from dead microbes and protect it from degradation. We propose that for the formation of functional biogeochemical interfaces microbial dispersal (e.g. along fungal networks) in response to quality and quantity of bioavailable carbon and/or water availability plays a major role, as the development of functional guilds of microbes requires energy and depends on the redox state of the habitat.To address these questions, hexadecane degradation will be studied in differently developed artificial and natural soils. To answer the question on the role of carbon quantity and quality, experiments will be performed with and without litter material at different water contents of the soil. Experiments will be performed with intact soil columns as well as soil samples where the developed interface structure has been artificially destroyed. Molecular analysis of hexadecane degrading microbial communties will be done in vitro as well as in situ. The corresponding toolbox has been successfully developed in the first phase of the priority program including methods for genome, transcriptome and proteome analysis.
Dissolved organic matter (DOM) is one major source of subsoil organic matter (OM). P5 aims at quantifying the impact of DOM input, transport, and transformation to the OC storage in the subsoil environment. The central hypotheses of this proposal are that in matric soil the increasing 14C age of organic carbon (OC) with soil depth is due to a cascade effect, thus, leading to old OC in young subsoil, whereas within preferential flowpaths sorptive stabilization is weak, and young and bioa-vailable DOM is translocated to the subsoil at high quantities. These hypotheses will be tested by a combination of DOC flux measurements with the comparative analysis of the composition and the turnover of DOM and mineral-associated OM. The work programme utilizes a DOM monitoring at the Grinderwald subsoil observatory, supplemented by defined experiments under field and labora-tory conditions, and laboratory DOM leaching experiments on soils of regional variability. A central aspect of the experiments is the link of a 13C-leaf litter labelling experiment to the 14C age of DOM and OM. With that P5 contributes to the grand goal of the research unit and addresses the general hypotheses that subsoil OM largely consists of displaced and old OM from overlying horizons, the sorption capacity of DOM and the pool size of mineral-associated OM are controlled by interaction with minerals, and that preferential flowpaths represent 'hot spots' of high substrate availability.
Dairy farming across Germany displays diverse production systems. Factor endowment, management, technology adoption as well as competitive dynamics in the local or regional land, agribusiness and dairy processing sectors contribute to this differentiation on farm level. These differences impact on the ability of dairy farms and regional dairy production systems to successfully respond to pressures arising from future market and policy changes. The overall objective of the research activities of which this project is a part of, is to develop a thorough understanding of the processes that govern the spatial dynamics of dairy farm development in different regions in Germany. The central hypothesis of this research project is that management system and technological choices differ systematically across local production and market conditions. The empirical approach will focus on the estimation of farm specific nonparametric cost functions for dairy farms located in across Germany differentiated by time and location. A spatially differentiated data base with information on input use, resource availability, as well as local market conditions for land and output markets will be compiled. The nonparametric approach is specifically suited to disclose a more accurate representation of dairy production system heterogeneity across locations and time compared to parametric concepts as it provides the necessary flexibility to accommodate non-linearities relevant for a wide domain of explanatory variables. The methodology employed goes beyond the state of the art of the literature as it combines kernel density estimation with a Bayesian sampling approach to provide theory consistent parameters for each farm in the data sample.The specific methodological hypothesis is that the nonparametric approach is superior to current parametric techniques and this hypothesis is tested using statistical model evaluation. Regarding the farm management and technological choices, we hypothesize that land suitability for feed production determines the farm intensity of dairy production and thus management and technological choices. With respect to the ability of farms to successfully respond to market pressures we hypothesize that farms at the upper and lower tail of the intensity distribution both can generate positive returns from dairy production. These last two hypotheses will be tested using the estimated spatially differentiated farm specific costs and marginal costs.The expected outcomes are of relevance for the agricultural sector and the food supply chain economy as a whole as fundamental market structure changes in the dairy sector are ongoing due to the abolition of the quota regulation in the years 2014/2015. Thus, exact knowledge about differences and development of dairy cost heterogeneity of farms within and between regions are an important factor for the actors involved in the market as well as the political support of this process.
Calcium supply in tropical soils is variable and frequently low. In spite of the heterogeneous Ca supply, some plant species, such as figs, maintain high Ca concentrations in their tissues. Figs are keystone species with more than proportional importance for the functioning of a tropical rain forest. High Ca concentrations in fig fruits may render them particularly attractive for frugivorous vertebrates. We propose to study the whole Ca cycling from soil through a selected fig species, Ficus insipida Willd. and frugivorous bats, their main dispersers, back to soil. The study will be conducted in Panama on sites differing in soil Ca status to assess the importance of soil Ca availability for fig fruit content and bat reproduction. We will quantify aboveground Ca fluxes for 16 trees along a gradient of Ca availability in soil. We will determine (1) Ca concentrations in soils, figs and leaves, (2) nutritional quality of fig and other bat-dispersed fruits and their importance for Ca balance in relation to reproduction of fruit-eating bats, (3) Ca fluxes with litterfall, throughfall, stemflow, bat pellets and faeces, (4) the importance of the contribution of bats to the Ca cycle of individual fig trees, and (5) the effect of fig trees on soil Ca concentrations.
The nature of the microbial communities inhabiting the deeper soil horizons is largely unknown. It is also not clear why subsurface microorganisms do not make faster use of organic compounds under field conditions. The answer could be provided by a reciprocal soil transfer experiment studying the response of transferred soils to fluctuations in microclimate, organic inputs, and soil biota. The subproject P9 will be responsible for the establishment of reciprocal transfer experiments offering a strong link between subgroups interested in organic matter quality, transport of organic substances, as well as functions of the soil microbial community. A single, high molecular weight substrate (13C labelled cellulose) will be applied at two different levels in the pre-experiment to understand the dose-dependent reaction of soil microorganisms in transferred surface and sub-soils. Uniformly 13C labelled beech roots - representing complex substrates - will be used for the main reciprocal soil transfer experiment. We hypothesize that transferring soil cores between subsoil and surface soil as well as addition of labelled cellulose or roots will allow us to evaluate the relative impact of surface/subsurface habitat conditions and resource availability on abundance, function, and diversity of the soil microbial community. The second objective of the subproject is to understand whether minerals buried within different soil compartments (topsoil vs. subsoil) in the field contribute to creation of hot spots of microbial abundance and activity within a period of two to five years. We hypothesize that soil microorganisms colonize organo-mineral complexes depending on their nutritional composition and substrate availability. The existence of micro-habitat specific microbial communities could be important for short term carbon storage (1 to 6 years). The third objective is to understand the biogeography and function of soil microorganisms in different subsoils. Parent material as well as mineral composition might control niche differentiation during soil development. Depending on size and interconnectedness of niches, colonization and survival of soil microbial communities might be different in soils derived from loess, sand, terra fusca, or sandstone. From the methodological point of view, our specific interest is to place community composition into context with soil microbial functions in subsoils. Our subgroup will be responsible for determining the abundance, diversity, und function of soil microorganisms (13C microbial biomass, 13C PLFA, enzyme activities, DNA extraction followed by quantitative PCR). Quantitative PCR will be used to estimate total abundances of bacteria, archaea and fungi as well as abundances of specific groups of bacteria at high taxonomic levels. We will apply taxa specific bacterial primers because classes or phyla might be differentiated into ecological categories on the basis of their life strategies.
In subsoils, organic matter (SOM) concentrations and microbial densities are much lower than in topsoils and most likely highly heterogeneously distributed. We therefore hypothesize, that the spatial separation between consumers (microorganisms) and their substrates (SOM) is an important limiting factor for carbon turnover in subsoils. Further, we expect microbial activity to occur mainly in few hot spots, such as the rhizosphere or flow paths where fresh substrate inputs are rapidly mineralized. In a first step, the spatial distribution of enzyme and microbial activities in top- and subsoils will be determined in order to identify hot spots and relate this to apparent 14C age, SOM composition, microbial community composition and soil properties, as determined by the other projects within the research unit. In a further step it will be determined, if microbial activity and SOM turnover is limited by substrate availability in spatially distinct soil microsites. By relating this data to root distribution and preferential flow paths we will contribute to the understanding of stabilizing and destabilizing processes of subsoil organic matter. As it is unclear, at which spatial scale these differentiating processes are effective, the analysis of spatial variability will cover the dm to the mm scale. As spatial segregation between consumers and substrates will depend on the pore and aggregate architecture of the soil, the role of the physical integrity of these structures on SOM turnover will also be investigated in laboratory experiments.
The detritusphere is an excellent model to study microbial-physicochemical interactions during degradation of the herbicide MCPA. Whereas during the first phase of SPP 1315 we focused on bacterial and fungal abundance at the soil litter interface and carbon flow between different compartments, the second phase will be devoted to elucidating complex regulation mechanisms of MCPA degradation in the detritusphere: (1) At the cellular level, co-substrate availability and laccase abundance might be important regulators, (2) at the community level, bacteria harbouring different classes of tfdA genes might control degradation of MCPA and (3) at the microhabitat level, interaction between MCPA degraders and organo-mineral surfaces as well as transport processes might be important regulators. The concept of hierarchical regulation of MCPA degradation will be included into the modelling of small-scale microbial growth, MCPA transport and MCPA degradation near the soil-litter interface.
Understanding transport of contaminants is fundamental for the management of groundwater re-sources and the implementation of remedial strategies. In particular, mixing processes in saturated porous media play a pivotal role in determining the fate and transport of chemicals released in the subsurface. In fact, many abiotic and biological reactions in contaminated aquifers are limited by the availability of reaction partners. Under steady-state flow and transport conditions, dissolved reactants come into contact only through transverse mixing. In homogeneous porous media, transverse mixing is determined by diffusion and pore-scale dispersion, while in heterogeneous formations these local mixing processes are enhanced. Recent studies investigated the enhancement of transverse mixing due to the presence of heterogeneities in two-dimensional systems. Here, mixing enhancement can solely be attributed to flow focusing within high-permeability inclusions. In the proposed work, we will investigate mixing processes in three dimensions using high-resolution laboratory bench-scale experiments and advanced modeling techniques. The objective of the proposed research is to quantitatively assess how 3-D heterogeneity and anisotropy of hydraulic conductivity affect mixing processes via (i) flow focusing and de-focusing, (ii) increase of the plume surface, (iii) twisting and intertwining of streamlines and (iv) compound-specific diffusive/dispersive properties of the solute species undergoing transport. The results of the experimental and modeling investigation will allow us to identify effective large-scale parameters useful for a correct description of conservative and reactive mixing at field scales allowing to explain discrepancies between field observations, bench-scale experiments and current stochastic theory.
Global climate change will alter the species composition of forests with far reaching consequences for the biogeochemistry of the water, carbon and nitrogen cycles, the sustainability of economic development and even human health. The annual productivity of wood is substantial for the carbon sequestration and budget of the forests in Eurasia. Whereas a number of publications on the climatic influence on tree radial growth exist, little is known about the precise mechanisms of tree-ring formation, timing and rates of their growth, and about the influence of other exogenous factors such as forest fires, permafrost, or logging on biomass accumulation and carbon sequestration. An improved mechanistic understanding will be particularly important with respect to the prediction of future forest response. In the proposed project, we aim to study the influence of a changing climate on trees by analyzing the main factors controlling tree-ring growth in extreme conditions. We will focus our study on forest ecosystems in regions which are very sensitive to climatic changes and where rapid and dramatic environmental and climatic changes can take place: 1) The high latitude permafrost region in Central Siberia (Russia) 2) The semi-arid dry areas in Central Asia (Uzbekistan) 3) The high altitude temperature-sensitive region of the Swiss Alps (Lötschental, Switzerland). The conifer trees growing in these regions could be seriously damaged due to expected future changes in temperature, CO2 and water availability. The thawing of permafrost and increasing drought situation could be key factors influencing forest growth and possible forest decline. Tree ring samples from the above mentioned regions will be considered to analyze the climatic response according to the following approaches: Intra-seasonal dynamics of tree-ring formation will be recorded and correlated with monitored environmental factors, like air and soil temperature and humidity, permafrost depth and the isotope composition of soil water, precipitation, river and stream water. A broad network of dendrochronological data from different research stations will be developed for each region to cover various local conditions. Special attention will be paid to the carbon/water relations of trees by determination of stable isotope ratios of different ecosystem compartments and tree rings. Project partners are Paul Scherrer Institut, Switzerland (PSI), Swiss Federal Research Institute WSL, Switzerland (WSL), V.N.Sukachev Institute of Forest, Krasnoyarsk, Russia (IF) and Samarkand State University, Uzbekistan (UZ).
The elevated areas of Northern Thailand highlands are inhabited by ethnic minorities. On the other hand, the Thai majority prefers the valley bottoms. Population growth of all groups, reforestation and commercialisation of agriculture lead to an increasing pressure on land and water resources. Therefore, intensified land and water use systems are desired which are resource conserving at the same time. Here, special problem areas are the karstic limestone catchments due to the limited of surface waters.Own pre-investigations together with subproject A1 have shown, that land use systems there are subsistence oriented and local farmers do not use irrigation. But they would like to develop such technology, especially in order to increase staple crop production (highland rice, maize). But lack of irrigation possibilities is also responsible for the lack of diversification of land use systems with respect to orchards. One possibility to increase staple crop yields is to prolong the vegetation period by use of water harvesting technologies. Aim of this project is to develop such low cost water harvesting technologies (together with subproject B3.1) based on a participatory approach and to model the effect of these on the water balance at the catchments scale. This will be done on the basis of the previous variability studies and should lead to model tools, which allow to evaluate ex ante SFB innovation effects on the water balance. The project area is the Bor Krai catchments. Here, weirs will be installed to quantify surface water availability. An investigation plot will be situated near the village of Bor Krai which serves for water balance measurements (TDR/densitometry) and at the same time as demonstration plot for the local community. Here water harvesting by means of filling the soils field capacity at the end of the rainy season by gravity irrigation in order to prolong the vegetation period will be researched. Through cropping of participatory evaluated varieties the crop yield should be increased. The water consumption of traditionally managed and dominant crops (including orchards) will be measured at three further sites in the catchment (TDR, tensiometer). The water balance of the soil cover in the karst catchment will be based on the coupling of a SOTER map with a water transport model. The data base will be completed by soil type mapping, spatially randomised collection of soil physical properties (texture, bulk density, infiltration, water retention curve) and determination of the ku-function at two representative sites. As project results the available water amount for irrigation purposes will be quantified. The effective use of this water reserve will lead to increased productivity of the dominant crops and limitations to orchard productivity will be reduced. (abridged text)
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