Fusarium species of the Gibberella fujikuroi species complex cause serious diseases on different crops such as rice, wheat and maize. An important group of plant pathogens is the Gibberella fujikuroi species complex (GFC) of closely related Fusarium species which are associated with specific hosts; F. verticillioides and F. proliferatum are particularly associated with maize where they can cause serious ear-, root-, and stalk rot diseases. Two other closely related species of the GFC, F. mangiferae and F. fujikuroi, which share about 90Prozent sequence identity with F. verticillioides, are pathogens on mango and rice, respectively. All of these species produce a broad spectrum of secondary metabolites such as phytohormones (gibberellins, auxins, and cytokinins), and harmful mycotoxins, such as fumonisin, fusarin C, or fusaric acid in large quantities. However, the spectrum of those mycotoxins might differ between closely related species suggesting that secondary metabolites might be determinants for host specificity. In this project, we will study the potential impact of secondary metabolites (i.e. phytohormones and certain mycotoxins) and some other species-specific factors (e.g. species-specific transcription factors) on host specificity. The recently sequenced genomes of F. mangiferae and F. fujikuroi by our groups and the planned sequencing of F. proliferatum will help to identify such determinants by genetic manipulation of the appropriate metabolic pathway(s).
In soils and sediments there is a strong coupling between local biogeochemical processes and the distribution of water, electron acceptors, acids, nutrients and pollutants. Both sides are closely related and affect each other from small scale to larger scale. Soil structures such as aggregates, roots, layers, macropores and wettability differences occurring in natural soils enhance the patchiness of these distributions. At the same time the spatial distribution and temporal dynamics of these important parameters is difficult to access. By applying non-destructive measurements it is possible to overcome these limitations. Our non-invasive fluorescence imaging technique can directly quantity distribution and changes of oxygen and pH. Similarly, the water content distribution can be visualized in situ also by optical imaging, but more precisely by neutron radiography. By applying a combined approach we will clarify the formation and architecture of interfaces induces by oxygen consumption, pH changes and water distribution. We will map and model the effects of microbial and plant root respiration for restricted oxygen supply due to locally high water saturation, in natural as well as artificial soils. Further aspects will be biologically induced pH changes, influence on fate of chemicals, and oxygen delivery from trapped gas phase.
Electrical conductivity is a key parameter in models of magnetic field generation in planetary interiors through magneto-hydrodynamic convection. Measurements of this key material parameter of liquid metals is not possible to date by experiments at relevant conditions, and dynamo models rely on extrapolations from low pressure/temperature experiments, or more recently on ab-initio calculations combining molecular dynamics and linear response calculations, using the Kubo-Greenwood formulation of transport coefficients. Such calculations have been performed for Fe, Fe-alloys, H, He and H-He mixtures to cover the interior of terrestrial and giant gas planets. These simulations are computationally expensive, and an efficient accurate scheme to determine electrical conductivities is desirable. Here we propose a model that can, at much lower computational costs, provide this information. It is based on Ziman theory of electrical conductivity that uses information on the liquid structure, combined with an internally consistent model of potentials for the electron-electron, electron-atom, and atom-atom interactions. In the proposal we formulate the theory and expand it to multi-component systems. We point out that fitting the liquid structure factor is the critical component in the process, and devise strategies on how this can be done efficiently. Fitting the structure factor in a thermodynamically consistent way and having a transferable electron-atom potential we can then relatively cheaply predict the electrical conductivity for a wide range of conditions. Only limited molecular dynamics simulations to obtain the structure factors are required.In the proposed project we will test and advance this model for liquid aluminum, a free-electron like metal, that we have studied with the Kubo-Greenwood method previously. We will then be able to predict the conductivities of Fe, Fe-light elements and H, He, as well as the H-He system that are relevant to the planetary interiors of terrestrial and giant gas planets, respectively.
We study population biology and life histories of DSE. Dark septate root endophytes (DSE) are ubiquitous fungal tree root colonizers in temperate and boreal conifer forest ecosystems. The supposedly asexual Phialocephala fortinii was identified as the main component of these DSE but constitutes a species complex in its own right. Species in this complex are morphologically indistinguishable with one exceptition; Acephala applanata was described as a new species which is characterized by the absence of aerial mycelium and slow growth rate. Application of biological, phylogenetic and population genetic species concepts will allow to discriminate additional species. The experimental programme is multi-disciplinary in approach, utilizing classical mycological and molecular genetic techniques.
Durum wheat is mainly grown as a summer crop. An introduction of a winter form failed until now due to the difficulty to combine winter hardiness with required process quality. Winter hardiness is a complex trait, but in most regions the frost tolerance is decisive. Thereby a major QTL, which was found in T. monococcum, T.aestivum, H. vulgare and S.cereale on chromosome 5, seems especially important. With genotyping by sequencing it is now possible to make association mapping based on very high dense marker maps, which delivers new possibilities to detect main and epistatic effects. Furthermore, new sequencing techniques allow candidate gene based association mapping. The main aim of the project is to unravel the genetic architecture of frost tolerance and quality traits in durum. Thereby, the objectives are to (1) determine the genetic variance, heritability and correlations among frost tolerance and quality traits, (2) examine linkage disequilibrium and population structure, (3) investigate sequence polymorphism at candidate genes for frost tolerance, and (4) perform candidate gene based and genome wide association mapping.
Neben Studien zur Diversität von Gefäßpflanzen in ausgewählten Untersuchungsflächen wurde der Erforschung der endemischen Palmenart Normanbya normanbyi besondere Aufmerksamkeit gewidmet. Im Mittelpunkt stehen Studien zur Blüten- und Fruchtökologie. Dabei wurde u.a. eine bisher unbeschriebene Gattung der Gallmücken entdeckt. Der interdisziplinäre Forschungsansatz soll wesentliche Erkenntnisse über Tier-Pflanze-Interaktionen in Regenwäldern liefern. Hauptaugenmerk liegt auf der Erfassung der Blüten- und Fruchtphänologie eines tropischen Tieflandregenwaldes in Nordostqueensland. Das Projekt beinhaltet die Erfassung der Phänologie aller Unterwuchsarten, Lianen und Baumarten in einer 1 ha großen Untersuchungsfläche. Weiterführend wird die Blühphänologie einer ausgewählten Palmenart Normanbay normanbyi erfasst und mit Hilfe molekulargenetischer Methoden im Zusammenhang mit der Verwandtschaftsstruktur ausgewählter Populationen betrachtet. Die Feldarbeiten für das 2003 begonnene Projekt wurden im Juli 2005 abgeschlossen.
Especially during the last decades, the natural forests of Ethiopia have been heavily disturbed by human activities. Some forests have been totally cleared and converted into fields for agricultural use, other suffered from different influences, such as heavy grazing and selective logging. The ongoing research in the Shashemane-Munessa-study area (Gu 406/8-1,2) showed clearly that, in spite of interdiction and control, forests continue to be cleared and degraded. However, it is not yet sufficiently known, how and why these processes are still going on. Growing population pressure and economic constraints for the people living in and around the forests contribute to the actual situation but allow no final answers to the complex situation. Concerning a sustainable management of the forests there is to no solid basis for recommendations from the socioeconomic and socio-cultural view. Therefore, a comprehensive analysis of the traditional needs and forms of forest use, including all forest products, is necessary. The objective of this project is, to achieve this basis by carrying out intensive field observations, the consultation of aerial photographs, satellite imagery and above all semi-structured interviews with the population in the study area in order to contribute to the recommendations for a sustainable use of the Munessa Shasemane forests.
Comprehension of belowground competition between plant species is a central part in understanding the complex interactions in intercropped agricultural systems, between crops and weeds as well as in natural ecosystems. So far, no simple and rapid method for species discrimination of roots in the soil exists. We will be developing a method for root discrimination of various species based on Fourier Transform Infrared (FTIR)-Attenuated Total Reflexion (ATR) Spectroscopy and expanding its application to the field. The absorbance patterns of FTIR-ATR spectra represent the chemical sample composition like an individual fingerprint. By means of multivariate methods, spectra will be grouped according to spectral and chemical similarity in order to achieve species discrimination. We will investigate pea and oat roots as well as maize and barnyard grass roots using various cultivars/proveniences grown in the greenhouse. Pea and oat are recommendable species for intercropping to achieve superior grain and protein yields in an environmentally sustainable manner. To evaluate the effects of intercropping on root distribution in the field, root segments will be measured directly at the soil profile wall using a mobile FTIR spectrometer. By extracting the main root compounds (lipids, proteins, carbohydrates) and recording their FTIR-ATR spectra as references, we will elucidate the chemical basis of species-specific differences.
Changes in agroecosystem management (e.g. landscape diversity, management intensity) affect the natural control of pests. The effects of agricultural change on this ecosystem service, however, are not universal and the mechanisms affecting it remain to be understood. As biological control is effectively the product of networks of interactions between pests and their natural enemies, food web analysis provides a versatile tool to address this gap of knowledge. The proposed project will utilize a molecular food web approach and examine, for the first time, how changes in plant fertilisation and landscape complexity affect quantitative aphid-parasitoid-hyperparasitoid food webs on a species-specific level to unravel how changes in food web interactions affect parasitoid aphid control. Based on the fieldderived data, cage experiments will be conducted to assess how parasitoid diversity and identity affect parasitoid interactions and pest control, complementing the field results. The work proposed here will take research on parasitoid aphid control one step further, as it will provide a clearer understanding of how plant fertilization affects whole aphid-parasitoid food webs in both simple and complex landscapes, allowing for further improvements in natural pest control.
Chromium (Cr) is introduced into the environment by several anthropogenic activities. A striking ex-ample is the area around Kanpur in the Indian state of Uttar Pradesh, where large amounts of Cr-containing wastes have been recently illegally deposited. Hexavalent Cr, a highly toxic and mobile contaminant, is present in significant amounts in these wastes, severely affecting the quality of sur-roundings soils, sediments, and ground waters. The first major goal of this study is to clarify the solid phase speciation of Cr in these wastes and to examine its leaching behavior. X-ray diffraction and synchrotron-based X-ray absorption spectroscopy techniques will be employed for quantitative solid phase speciation of Cr. Its leaching behavior will be studied in column experiments performed at un-saturated moisture conditions with flow interruptions simulating monsoon rain events. Combined with geochemical modeling, the results will allow the evaluation of the leaching potential and release kinetics of Cr from the waste materials. The second major goal is to investigate the spatial distribution, speciation, and solubility of Cr in the rooting zone of chromate-contaminated soils surrounding the landfills, and to study the suitability of biochar as novel soil amendment for mitigating the deleterious effects of chromate pollution. Detailed field samplings and laboratory soil incubation studies will be carried out with two agricultural soils and biochar from the Kanpur region.
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