Sediment erosion and transport is critical to the ecological and commercial health of aquatic habitats from watershed to sea. There is now a consensus that microorganisms inhabiting the system mediate the erosive response of natural sediments ('ecosystem engineers') along with physicochemical properties. The biological mechanism is through secretion of a microbial organic glue (EPS: extracellular polymeric substances) that enhances binding forces between sediment grains to impact sediment stability and post-entrainment flocculation. The proposed work will elucidate the functional capability of heterotrophic bacteria, cyanobacteria and eukaryotic microalgae for mediating freshwater sediments to influence sediment erosion and transport. The potential and relevance of natural biofilms to provide this important 'ecosystem service' will be investigated for different niches in a freshwater habitat. Thereby, variations of the EPS 'quality' and 'quantity' to influence cohesion within sediments and flocs will be related to shifts in biofilm composition, sediment characteristics (e.g. organic background) and varying abiotic conditions (e.g. light, hydrodynamic regime) in the water body. Thus, the proposed interdisciplinary work will contribute to a conceptual understanding of microbial sediment engineering that represents an important ecosystem function in freshwater habitats. The research has wide implications for the water framework directive and sediment management strategies.
Peroxyradikale sind kurzlebige Spezies, die an den meisten Oxidationsprozessen in der Atmosphäre beteiligt sind, die zur Bildung von langlebigeren und chemisch oder toxikologisch wichtigen Schadstoffen wie Ozon führen. Insbesondere in Gebieten, die von komplexen Emissionsquellen betroffen sind, sind Peroxyradikal-Messmethoden mit ausreichender Genauigkeit, Reproduzierbarkeit und Empfindlichkeit erforderlich, um die chemische Umwandlung der städtischen Umweltverschmutzung zu verstehen. In dieser Hinsicht ermöglichen Vergleiche von state-of-the-art Sensoren in chemischen Reaktorkammern deren Charakterisierung unter kontrollierten Bedingungen und verbessern das Vertrauen in die Messung von Peroxyradikalen.SPRUCE strebt ein besseres Verständnis der Rolle der Peroxyradikale bei atmosphärischen chemischen Umwandlungen an, die aus der Wechselwirkung zwischen urbanen anthropogenen und ländlichen biogenen Emissionen resultieren. Im Rahmen der vorgeschlagenen Arbeit wird das vorhandene PeRCEAS-Instrument (Peroxy Radical Chemical Enhancement and Absorption Spectrometer) an der Messkampagne des internationalen Projekts ACROSS (Atmospheric ChemistRy Of the Suburban Forest) zur Untersuchung des Schadstoffausflusses von Paris über ein Waldgebiet, und in der internationalen Vergleichsstudie ROxCOMP22 für wissenschaftliche Instrumente, die atmosphärische Peroxyradikale teilnehmen. Diese beiden Messkampagnen befassen sich mit zwei Hauptaspekten von SPRUCE. Sie bieten eine einzigartige Gelegenheit für a) die Messung von Peroxyradikalen in der spezifischen Umgebung von Interesse und in Verbindung mit einer umfangreichen Reihe von Beobachtungen, die für die Interpretation der Radikalchemie von wesentlicher Bedeutung sind, und b) die Bewertung der Datenqualität und Leistungsfähigkeit von PeRCEAS, insbesondere die Überprüfung der Sensitivität und Effizienz für die Speziation der Radikale unter kontrollierten Bedingungen.Ein Schwerpunkt der Studie wird auf der Untersuchung von Oxidationsreaktionen und Ozonausbeuten in Luftmassen mit unterschiedlicher anthropogener/biogener Signatur in Abhängigkeit von der Menge und Zusammensetzung von Peroxyradikalen liegen. Numerische Berechnungen und Modelle werden durch die Beobachtungen von Vorläuferspezies eingeschränkt, um die Budgets von Peroxyradikalen abzuschätzen. Der Vergleich mit den PeRCEAS-Messungen wird verwendet, um das Verständnis der Oxidationsmechanismen in urbanen Plumes gemischt mit biogenen Emissionen zu testen. Es wird erwartet, dass die Analyse des resultierenden Datensatzes das aktuelle Wissen über die chemische Transformation von Megacity-Emissionen während des atmosphärischen Transports ergänzt.
The final goal of the EUROWET project is to integrate the substantial multidisciplinary European research in wetlands to help attain the sustainable management of the water cycle. This will be achieved by the translation of state-of-the art science developed at both national and European levels, into practical guidance for end-users. This will be achieved by a comprehensive review, expert assessment and a focussed dissemination strategy. There is considerable scientific knowledge and technical experience gained in diverse aspects of wetland science and management including hydrology, biogeochemistry, ecology restoration, socio-economic and policy analysis. However the results of research and management experience are still too fragmentary and not sufficiently orientated to problem-solving or simply inadequately framed to be effectively transferred to, or used by, stakeholders and policy-makers. Simultaneously the general outcome of the scientific research has been increased awareness of the significance of wetlands in delivering goods and services important for human welfare including quality of life, biodiversity conservation and maintenance or enhancement of environment quality. Despite this wetlands continue to be degraded and lost throughout Europe without adequate consideration of the wider benefits to be achieved from this management. The new Water Framework Directive (WFD) promotes a unique opportunity to redress this problem by means of the holistic, integrated approach to water management. There is currently in preparation horizontal guidance on Wetlands as part of the Common Implementation Strategy (CIS) process. There is however work still to be done on providing more specific scientific and technical guidance on the effective implementation of the Directive with respect to wetlands. This is particularly the case in relation to Integrated River Management, the CIS cluster within which wetlands are being considered in the WFD.
Cydia pomonella granulovirus (CpGV, Baculoviridae) is one of the most important agents for the control of codling moth (CM, Cydia pomonella, L.) in both biological and integrated pest management. The rapid emergence of resistance against CpGV-M, which was observed in about 40 European CM field populations from 2003 on, could be traced back to a single, dominant, sex-linked gene. Since then, resistance management has been based on mixtures of new CpGV isolates (CpGV-I12, -S), which are able to overcome this resistance. Recently, resistance even to these novel isolates was observed in CM field populations. This resistance does not follow the described dominant, sex-linked inheritance trait. At the same time, another isolate CpGV-V15 was identified showing high virulence against these resistant populations. To elucidate this novel resistance mechanism and to identify the resistance gene(s) involved, we propose a comprehensive analysis of this resistance on the cellular and genomic level of codling moth. Because of the lack of previous knowledge of the molecular mechanisms of virus resistance in insects, several different and complementary approaches will be pursued. This study will not only give an in-depth insight into the genetic possibilities for development of baculovirus resistance in CM field populations and how the virus overcomes it, but can also serve as an important model for other baculovirus-host interaction systems.
Durum wheat is mainly grown as a summer crop. An introduction of a winter form failed until now due to the difficulty to combine winter hardiness with required process quality. Winter hardiness is a complex trait, but in most regions the frost tolerance is decisive. Thereby a major QTL, which was found in T. monococcum, T.aestivum, H. vulgare and S.cereale on chromosome 5, seems especially important. With genotyping by sequencing it is now possible to make association mapping based on very high dense marker maps, which delivers new possibilities to detect main and epistatic effects. Furthermore, new sequencing techniques allow candidate gene based association mapping. The main aim of the project is to unravel the genetic architecture of frost tolerance and quality traits in durum. Thereby, the objectives are to (1) determine the genetic variance, heritability and correlations among frost tolerance and quality traits, (2) examine linkage disequilibrium and population structure, (3) investigate sequence polymorphism at candidate genes for frost tolerance, and (4) perform candidate gene based and genome wide association mapping.
Traditional Indonesian homegardens harbour often high crop diversity, which appears to be an important basis for a sustainable food-first strategy. Crop pollination by insects is a key ecosystem service but threatened by agricultural intensification and land conversion. Gaps in knowledge of actual benefits from pollination services limit effective management planning. Using an integrative and agronomic framework for the assessment of functional pollination services, we will conduct ecological experiments and surveys in Central Sulawesi, Indonesia. We propose to study pollination services and net revenues of the locally important crop species cucumber, carrot, and eggplant in traditional homegardens in a forest distance gradient, which is hypothesized to affect bee community structure and diversity. We will assess pollination services and interactions with environmental variables limiting fruit maturation, based on pollination experiments in a split-plot design of the following factors: drought, nutrient deficiency, weed pressure, and herbivory. The overall goal of this project is the development of 'biodiversity-friendly' land-use management, balancing human and ecological needs for local smallholders.
Barley (Hordeum vulgare) is an important cereal grain which serves as major animal fodder crop as well as basis for malt beverages or staple food. Currently barley is ranked fourth in terms of quantity of cereal crops produced worldwide. In times of a constantly growing world population in conjunction with an unforeseeable climate change and groundwater depletion, the accumulation of knowledge concerning cereal growth and rate of yield gain is important. The Nordic Genetic Resource Center holds a major collection of barley mutants produced by irradiation or chemical treatment. One phenotypic group of barley varieties are dwarf mutants (erectoides, brachytic, semidwarf, uzu). They are characterized by a compact spike and high rate of yield while the straw is short and stiff, enhancing the lodging resistance of the plant. Obviously they are of applied interest, but they are also of scientific interest as virtually nothing is known about the genes behind the development of plant dwarfism. The aim of this project is to identify and isolate the genes carrying the mutations by using state of the art techniques for gene cloning at the Carlsberg Laboratory. The identified genes will be connected with the mutant phenotype to reveal the gene function in general. One or two genes will be overexpressed and the resulting recombinant proteins will be biochemically and structurally characterized. The insights how the mutation effects the protein will display the protein function in particular. Identified genes and their mutant alleles will be tested in the barley breeding program of the Carlsberg brewery.
Fusarium species of the Gibberella fujikuroi species complex cause serious diseases on different crops such as rice, wheat and maize. An important group of plant pathogens is the Gibberella fujikuroi species complex (GFC) of closely related Fusarium species which are associated with specific hosts; F. verticillioides and F. proliferatum are particularly associated with maize where they can cause serious ear-, root-, and stalk rot diseases. Two other closely related species of the GFC, F. mangiferae and F. fujikuroi, which share about 90Prozent sequence identity with F. verticillioides, are pathogens on mango and rice, respectively. All of these species produce a broad spectrum of secondary metabolites such as phytohormones (gibberellins, auxins, and cytokinins), and harmful mycotoxins, such as fumonisin, fusarin C, or fusaric acid in large quantities. However, the spectrum of those mycotoxins might differ between closely related species suggesting that secondary metabolites might be determinants for host specificity. In this project, we will study the potential impact of secondary metabolites (i.e. phytohormones and certain mycotoxins) and some other species-specific factors (e.g. species-specific transcription factors) on host specificity. The recently sequenced genomes of F. mangiferae and F. fujikuroi by our groups and the planned sequencing of F. proliferatum will help to identify such determinants by genetic manipulation of the appropriate metabolic pathway(s).
Outbreaks of foodborne illness linked to consumptions of fresh, or partially processed, agricultural products are a growing concern in industrialized and developing countries. The incidence of human pathogens on fresh fruits and vegetables is often related to the use of recycled wastewaster in surface irrigation as well as high amounts of animal manure in agricultural management practice. Thereby the soil inhabiting fauna plays an important role in the transport and dissemination of microorganisms. The focus of the proposed project is on nematodes, well known vectors for bacteria and viruses in soil. The major goals are to: (1) survey human pathogens in soil and on/in free-living and plant parasitic nematodes in agriculture field sites irrigated with recycled wastewater or fertilized with fresh animal manure in Israel and the Palestinian Authority, (2) assess the function of nematodes as vectors in transmitting bacteria from microbial hot spots to plants, and (3) localize bacteria on and/or within the nematode and identify bacterial factors required for survival in the nematode host. Understanding the mechanisms involved in dissemination of human pathogens by nematodes will enhance the ability to develop practical means to minimize contamination of fresh produce and increase safety in food production.
Labor- und Feldstudien zeigen, dass die Oberflächengrenzschicht des Ozeans (â€Ìsurface microlayerâ€Ì, kurz SML) die biogeochemischen Kreisläufe von klimaaktiven und atmosphärisch wichtigen Spurengasen wie Kohlenstoffdioxid (CO2), Kohlenstoffmonoxid (CO), Methan (CH4), Lachgas (N2O) und Dimethylsulfid (DMS) stark beeinflusst: (i) Jüngste Studien aus den PASSME- und SOPRAN-Projekten haben hervorgehoben, dass Anreicherungen von oberflächenaktiven Substanzen (d.h. Tensiden) einen starken (dämpfenden) Effekt sowohl auf die CO2- als auch auf die N2O-Flüsse über die SML/Atmosphären-Grenzfläche hinweg haben und (ii) Spurengase können durch (mikro)biologische oder (photo)chemische Prozesse in der SML produziert und verbraucht werden. Daher kann der oberste Teil des Ozeans, einschließlich der SML, verglichen mit dem Wasser, das in der Mischungsschicht unterhalb der SML zu finden ist, eine bedeutende Quelle oder Senke für diese Gase sein, was von sehr großer Relevanz für die Forschungseinheit BASS ist. Die Konzentrationen von CO2, N2O und anderen gelösten Gasen in der SML (oder den oberen Zentimetern des Ozeans) unterscheiden sich nachweislich von ihren Konzentrationen unterhalb der SML. Typischerweise werden die Nettoquellen und -senken wichtiger atmosphärischer Spurengase mit Konzentrationen berechnet, die in der Mischungsschicht gemessen wurden und mit Gasaustauschgeschwindigkeiten, die die SML nicht berücksichtigen. Diese Diskrepanzen führen zu falsch berechneten Austauschflüssen, die in der Folge zu großen Unsicherheiten in den Berechnungen der Klima-Antrieben und der Luftqualität in Erdsystemmodellen führen können. Durch die Verknüpfung unserer Spurengasmessungen mit Messungen von (i) der Dynamik und den molekularen Eigenschaften der organischen Materie und speziell des organischen Kohlenstoffs (SP1.1; SP1.5), (ii) der biologischen Diversität und der Stoffwechselaktivität (SP1.2), (iii) den optischen Eigenschaften der organischen Materie (SP1.3), (iv) der photochemischen Umwandlung der organischen Materie (SP1.4) und (v) den physikalischen Transportprozessen (SP2.3) werden wir ein umfassendes Verständnis darüber erlangen, wie die SML die Variabilität der Spurengasflüsse beeinflusst.
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