In many plant species, FLOWERING LOCUS T and related proteins are the mobile signal that communicates information on photoperiod from the leaves to the shoots, where the transition to flowering is realized. FT expression is tightly controlled at the transcriptional level so that it is restricted to leaves, occurs only in appropriate photoperiods, and integrates ambient temperature and developmental cues, as well as information on biotic and abiotic stress. We previously established that FT transcription in the model plant Arabidopsis thaliana requires proximal promoter cis-elements and a distal enhancer, both evolutionary conserved among Brassicacea species. In addition, FT transcription is blocked prior vernalization in biannual accessions and vernalization-dependency of FT is controlled through a CArG-box located in the first intron that binds the transcriptional repressor FLOWERING LOCUS C (FLC). Chromatin-mediated repression by the Polycomb Group (PcG) pathway is required for photoperiod-dependent FT regulation and participates in FT expression level modulation in response to other cues.In this project, I propose to explore the available sequence data from the 1001 genome project in Arabidopsis to evaluate how often changes in regulatory cis-elements at FT have occurred and how these translate into an adaptive value. Allele-specific FT expression pattern will be measured in F1 hybrids of different accessions in response to varying environmental conditions. FT alleles that show cis-regulatory variation will be further analyzed to pinpoint the causal regulatory changes and study their effect in more detail. The allotetrapolyploid species Brassica napus is a hybrid of two Brassiceae species belonging to the A- and C-type genome, which are in turn mesopolyploid due to a genome triplication that occurred ca. 10x106 years ago. We will determine allele-specific expression of FT paralogs from both genomes of a collection of B. napus accessions. The plants will be grown in the field in changing environmental conditions to maximize the chance to detect expression variation of the paralogs. We will compare the contribution of the founder genomes to the regulation of flowering time and asses variation in this contribution. A particular focus will be to study the impact of chromatin-mediated repression on allele selection in B. napus.
Background: Ghanas transition forests, neighbouring savannahs and timber plantations in the Ashanti region face a constant degradation due to the increased occurrence of fires. In most cases the fires are deliberately set by rural people for hunting purposes. Main target is a cane rat, here called grasscutter (Thryonomys swinderianus), whose bushmeat is highly esteemed throughout the country. The animal is a wild herbivorous rodent of subhumid areas in Africa south of the Sahara. The grasscutter meat is an important source of animal protein. Existing high-value timber plantations (mainly Teak, Tectona grandis) are affected by fires for hunting purposes. Thus resulting in growth reduction, loss of biomass or even complete destruction of the forest stands. It became obvious that solutions had to be sought for the reduction of the fire risk. Objectives: Since 2004 the Institute for World Forestry of the Federal Research Centre for Forestry and Forest Products, Hamburg, Germany is cooperating with a Ghanaian timber plantation company (DuPaul Wood Treatment Ltd.) the German Foundation for Forest Conservation in Africa (Stiftung Walderhaltung in Afrika) and the Center for International Migration with the purpose to improve the livelihood of the rural population in the surroundings of the forest plantation sites and simultaneously to safeguard and improve the timber plantations. The introduction of grasscutter rearing systems to local farmers accompanied by permanent agricultural and agroforestry practices appeared to be a promising approach for the prevention of fires in the susceptible areas. Additionally a functioning grasscutter breeding system could contribute to the improvement of food security, development of income sources and the alleviation of poverty. The following measures are implemented: - Identification of farmers interested in grasscutter captive breeding, - Implementation of training courses for farmers on grasscutter rearing, - Delivery of breeding animals, - Supervision of rearing conditions by project staff, - Development of a local extension service for monitoring activities, - Evaluation of structures for grasscutter meat marketing. Results: After identification of key persons for animal rearing training courses were successfully passed and animals were delivered subsequently. Further investigations will evaluate the effects of the grasscutter rearing in the project region. This will be assessed through the - Acceptance of grasscutter rearing by farmers, - Success of the animal caging, - Reproduction rate, - Meat quality, - Marketing success of meat, - Reduction of fire in the vicinity of the timber plantations, - Improvement of peoples livelihood.
The majority of the worlds forests has undergone some form of management, such as clear-cut or thinning. This management has direct relevance for global climate: Studies estimate that forest management emissions add a third to those from deforestation, while enhanced productivity in managed forests increases the capacity of the terrestrial biosphere to act as a sink for carbon dioxide emissions. However, uncertainties in the assessment of these fluxes are large. Moreover, forests influence climate also by altering the energy and water balance of the land surface. In many regions of historical deforestation, such biogeophysical effects have substantially counteracted warming due to carbon dioxide emissions. However, the effect of management on biogeophysical effects is largely unknown beyond local case studies. While the effects of climate on forest productivity is well established in forestry models, the effects of forest management on climate is less understood. Closing this feedback cycle is crucial to understand the driving forces behind past climate changes to be able to predict future climate responses and thus the required effort to adapt to it or avert it. To investigate the role of forest management in the climate system I propose to integrate a forest management module into a comprehensive Earth system model. The resulting model will be able to simultaneously address both directions of the interactions between climate and the managed land surface. My proposed work includes model development and implementation for key forest management processes, determining the growth and stock of living biomass, soil carbon cycle, and biophysical land surface properties. With this unique tool I will be able to improve estimates of terrestrial carbon source and sink terms and to assess the susceptibility of past and future climate to combined carbon cycle and biophysical effects of forest management. Furthermore, representing feedbacks between forest management and climate in a global climate model could advance efforts to combat climate change. Changes in forest management are inevitable to adapt to future climate change. In this process, is it possible to identify win-win strategies for which local management changes do not only help adaptation, but at the same time mitigate global warming by presenting favorable effects on climate? The proposed work opens a range of long-term research paths, with the aim of strengthening the climate perspective in the economic considerations of forest management and helping to improve local decisionmaking with respect to adaptation and mitigation.
Bamboos (Poaceae) are widespread in tropical and subtropical forests. Particularly in Asia, bamboos are cultivated by smallholders and increasingly in large plantations. In contrast to trees, reliable assessments of water use characteristics for bamboo are very scarce. Recently we tested a set of methods for assessing bamboo water use and obtained first results. Objectives of the proposed project are (1) to further test and develop the methods, (2) to compare the water use of different bamboo species, (3) to analyze the water use to bamboo size relationship across species, and (4) to assess effects of bamboo culm density on the stand-level transpiration. The study shall be conducted in South China where bamboos are very abundant. It is planned to work in a common garden (method testing), a botanical garden (species comparison, water use to size relationship), and on-farm (effects of culm density). Method testing will include a variety of approaches (thermal dissipation probes, stem heat balance, deuterium tracing and gravimetry), whereas subsequent steps will be based on thermal methods. The results may contribute to an improved understanding of bamboo water use characteristics and a more appropriate management of bamboo with respect to water resources.
Outbreaks of foodborne illness linked to consumptions of fresh, or partially processed, agricultural products are a growing concern in industrialized and developing countries. The incidence of human pathogens on fresh fruits and vegetables is often related to the use of recycled wastewaster in surface irrigation as well as high amounts of animal manure in agricultural management practice. Thereby the soil inhabiting fauna plays an important role in the transport and dissemination of microorganisms. The focus of the proposed project is on nematodes, well known vectors for bacteria and viruses in soil. The major goals are to: (1) survey human pathogens in soil and on/in free-living and plant parasitic nematodes in agriculture field sites irrigated with recycled wastewater or fertilized with fresh animal manure in Israel and the Palestinian Authority, (2) assess the function of nematodes as vectors in transmitting bacteria from microbial hot spots to plants, and (3) localize bacteria on and/or within the nematode and identify bacterial factors required for survival in the nematode host. Understanding the mechanisms involved in dissemination of human pathogens by nematodes will enhance the ability to develop practical means to minimize contamination of fresh produce and increase safety in food production.
Recent and predicted increases in extremely dry and hot summers emphasise the need for silvicultural approaches to increase the drought tolerance of existing forests in the short-term, before adaptation through species changes may be possible. We aim to investigate whether resistance during droughts, as well as the recovery following drought events (resilience), can be increased by allocating more growing space to individual trees through thinning. Thinning increases access of promoted trees to soil stored water, as long as this is available. However, these trees may also be disadvantaged through a higher transpirational surface, or the increased neighbourhood competition by ground vegetation. To assess whether trees with different growing space differ in drought tolerance, tree discs and cores from thinning experiments of Pinus sylvestris and Pseudotsuga menziesii stands will be used to examine transpirational stress and growth reduction during previous droughts as well as their subsequent recovery. Dendroecology and stable isotopes of carbon and oxygen in tree-rings will be used to quantify how assimilation rate and stomatal conductance were altered through thinning. The results will provide crucial information for the development of short-term silvicultural adaptation strategies to adapt forest ecosystems to climate change. In addition, this study will improve our understanding of the relationship between resistance and resilience of trees in relation to extreme stress events.
Water is an intrinsic component of ecosystems acting as a key agent of lateral transport for particulate and dissolved nutrients, forcing energy transfers, triggering erosion, and driving biodiversity patterns. Given the drastic impact of land use and climate change on any of these components and the vulnerability of Ecuadorian ecosystems with regard to this global change, indicators are required that not merely describe the structural condition of ecosystems, but rather capture the functional relations and processes. This project aims at investigating a set of such functional indicators from the fields of hydrology and biogeochemistry. In particular we will investigate (1) flow regime and timing, (2) nutrient cycling and flux rates, and (3) sediment fluxes as likely indicators. For assessing flow regime and timing we will concentrate on studying stable water isotopes to estimate mean transit time distributions that are likely to be impacted by changes in rainfall patterns and land use. Hysteresis loops of nitrate concentrations and calculated flux rates will be used as functional indicators for nutrient fluxes, most likely to be altered by changes in temperature as well as by land use and management. Finally, sediment fluxes will be measured to indicate surface runoff contribution to total discharge, mainly influenced by intensity of rainfall as well as land use. Monitoring of (1) will be based on intensive sampling campaigns of stable water isotopes in stream water and precipitation, while for (2) and (3) we plan to install automatic, high temporal-resolution field analytical instruments. Based on the data obtained by this intensive, bust cost effective monitoring, we will develop the functional indicators. This also provides a solid database for process-based model development. Models that are able to simulate these indicators are needed to enable projections into the future and to investigate the resilience of Ecuadorian landscape to global change. For the intended model set up we will couple the Catchment Modeling Framework, the biogeochemical LandscapeDNDC model and semi-empirical models for aquatic diversity. Global change scenarios will then be analyzed to capture the likely reaction of functional indicators. Finally, we will contribute to the written guidelines for developing a comprehensive monitoring program for biodiversity and ecosystem functions. Right from the beginning we will cooperate with four SENESCYT companion projects and three local non-university partners to ensure that the developed monitoring program will be appreciated by locals and stakeholders. Monitoring and modelling will focus on all three research areas in the Páramo (Cajas National Park), the dry forest (Reserva Laipuna) and the tropical montane cloud forest (Reserva Biologica San Francisco).
The German dairy value chain is subject to profound structural change resulting in increasingly dominant agents at all stages of the chain, i.e. at the farm level, at the processors' level and at the retailers' level. In particular, the consolidation of retailers has increased retailers' bargaining power vis-à-vis their suppliers. Against this background, the overall objective of this subproject is to analyze the structural change in the dairy sector, particularly at the processors' level, by taking into account firms' strategic interactions along the entire dairy value chain. So far, there exists no theoretical workhorse model that allows for the analysis of interdependencies in a three-layer structure where imperfect competition is considered at all three stages. We aim to close this gap to understand how an increasingly dominant retail industry influences strategic decisions at the dairy processors' level which, in turn, may affect dairy farmers. Building upon a three-layer approach, we first examine whether processors have merger incentives to counter the retailers' bargaining power. We then analyze the differences between cooperatives and for-profit firms concerning their decision on product quality and the number of dairy suppliers. Finally, we assess the implications for upstream farmers which rounds off the picture of structural change in the German dairy sector.
It has been suggested that dying and decaying fine roots and root exudation represent important, if not the most important, sources of soil organic carbon (SOC) in forest soils. This may be especially true for deep-reaching roots in the subsoil, but precise data to prove this assumption are lacking. This subproject (1) examines the distribution and abundance of fine roots (greater than 2 mm diameter) and coarse roots (greater than 2 mm) in the subsoil to 240 cm depth of the three subsoil observatories in a mature European beech (Fagus sylvatica) stand, (2) quantifies the turnover of beech fine roots by direct observation (mini-rhizotron approach), (3) measures the decomposition of dead fine root mass in different soil depths, and (4) quantifies root exudation and the N-uptake potential with novel techniques under in situ conditions with the aim (i) to quantify the C flux to the SOC pool upon root death in the subsoil, (ii) to obtain a quantitative estimate of root exudation in the subsoil, and (iii) to assess the uptake activity of fine roots in the subsoil as compared to roots in the topsoil. Key methods applied are (a) the microscopic distinction between live and dead fine root mass, (b) the estimation of fine and coarse root age by the 14C bomb approach and annual ring counting in roots, (c) the direct observation of the formation and disappearance of fine roots in rhizotron tubes by sequential root imaging (CI-600 system, CID) and the calculation of root turnover, (d) the measurement of root litter decomposition using litter bags under field and controlled laboratory conditions, (e) the estimation of root N-uptake capacity by exposing intact fine roots to 15NH4+ and 15NO3- solutions, and (f) the measurement of root exudation by exposing intact fine root branches to trap solutions in cuvettes in the field and analysing for carbohydrates and amino acids by HPLC and Py-FIMS (cooperation with Prof. A. Fischer, University of Trier). The obtained data will be analysed for differences in root abundance and activity between subsoil (100-200 cm) and topsoil (0-20 cm) and will be related to soil chemical and soil biological data collected by the partner projects that may control root turnover and exudation in the subsoil. In a supplementary study, fine root biomass distribution and root turnover will also be studied at the four additional beech sites for examining root-borne C fluxes in the subsoil of beech forests under contrasting soil conditions of different geological substrates (Triassic limestone and sandstone, Quaternary sand and loess deposits).
Ziel der Forschungsarbeit ist die Klassifizierung von Boden-Biozönosen in ausgewählten Feldrainen. In drei Naturräumen (Lössböden der Jülicher Börde, Muschelkalkböden in Mainfranken und pleistozäne Sande bei Leipzig) werden typische Lebensgemeinschaften von Collembola und Gamasina (Taxozönosen) beschrieben. Der wesentliche Unterschied zu anderen Klassifikations-Ansätzen liegt in der induktiven Vorgehensweise: Biozönosen werden allein aufgrund der Artenzusammensetzung an den Standorten typisiert. Vegetationskundliche Kriterien dienen als entscheidendes Hilfsmittel zur Vorauswahl von Flächen mit ähnlichen Standortbedingungen. Hierbei wird gleichzeitig die aufgenommene Vegetation als ein weiteres Taxon der zu beschreibenden Biozönose angesehen. Die typische Artenzusammensetzung ist das integrierte Ergebnis aller denkbaren ökologischen Vorgänge. Ein Ziel der Arbeit ist somit die prospektive Formulierung von Erwartungswerten für Collembolen und Raubmilben auf der Basis vegetationskundlicher Daten. Es sollte daher möglich sein, dieses Mehrarten-System mit hoher Sensibilität zur Bioindikation von Standortveränderungen einzusetzen. Die Kenntnis der Artenstruktur wiederkehrender Lebensgemeinschaften kann der funktionellen Ökosystemforschung hilfreiche Hinweise bieten.
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