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Dieser Fortsetzungsantrag eines bestehenden Forschungsprojekts innerhalb der Forschergruppe INUIT (Ice Nuclei Research UnIT) hat zum Ziel, die physikalischen und chemischen Eigenschaften von atmosphärischen Eiskeimen (ice nucleating particles, INP) und Eispartikelresiduen (ice particle residuals, IPR) zu untersuchen. Es werden hauptsächlich zwei Messtechniken eingesetzt: virtueller Gegenstromimpaktor und Laserablationsmassenspektrometrie. Eiskeime (INP) aus atmosphärischem Aerosol werden erst in einem Eiskeimzähler aktiviert, so dass sich Eiskristalle bilden, die dann mit einem bepumpten Gegenstromimpaktor aufgrund ihrer Größe extrahiert und verdunstet werden können. Die freigesetzten INP können wiederum mit dem Massenspektrometer oder anderen Messtechniken untersucht werden. Dieses Experiment wird während einer Feldmesskampagne in der Nähe der Quellen von potentiell guten Eiskeimen (Mineralstaub, Biopartikel, anthropogene Partikel) durchgeführt. Ein geeigneter Kampagnenort hierfür ist die Mittelmeerregion, z.B. Südspanien. Die Eispartikelresiduen werden direkt aus unterkühlten Mischphasenwolken gesammelt. Hierzu wird ein spezieller Eis-Gegenstromimpaktor eingesetzt, der nur Eiskristalle sammelt und von den unterkühlten Wolkentröpfchen trennt. Nach der Sammlung wird das Eis der Eiskristalle verdunstet, so dass die Eisresidualpartikel freigesetzt werden und mittels des Laser- Ablationsmassenspektrometers analysiert werden können. Dieses Experiment wird auf einer Bergstation (Jungfraujoch) durchgeführt. Die Kombination aus Eiskeimzähler, bepumptem Gegenstromimpaktor und Massenspektrometer wird auch unter Laborbedingen zur Bestimmung der Eiskeimfähigkeit von internen und externen Partikelmischungen (z.B. biologisch/mineralisch) betrieben. Das Laserablationsmassenspektrometer in seiner Eigenschaft als Einzelpartikel-Analysegerät wird ebenfalls dazu eingesetzt, um den Mischungszustand der erzeugten Mischpartikel zu charakterisieren.
Organic matter (OM) composition and dynamic in subsoils is thought to be significantly different from those in surface soils. This has been suggested by increasing apparent 14C ages of bulk soil OM with depth suggesting that the amount of fresh, more easily degradable components is declining. Compositional changes have been inferred from declining ä13C values and C/N ratios indicative for stronger OM transformation. Beside these bulk OM data more specific results on OM composition and preservation mechanisms are very limited but modelling studies and results from incubation experiments suggest the presence and mineralization of younger, 'reactive carbon pool in subsoils. Less refractory OM components may be protected against degradation by interaction with soil mineral particles and within aggregates as suggested by the very limited number of more specific OM analysis e.g., identification of organic compound in soil fractions. The objective of this project is to characterize the composition, transformation, stabilization and bioavailability of OM in subsurface horizons on the molecular level: 1) major sources and compositional changes with depth will be identified by analysis of different lipid compound classes in surface and subsoil horizons, 2) the origin and stabilization of 'reactive OM will be revealed by lipid distributions and 14C values of soil fractions and of selected plant-specific lipids, and 3) organic substrates metabolized by microbial communities in subsoils are identified by distributional and 14C analysis of microbial membrane lipids. Besides detailed analyses of three soil profiles at the subsoil observatory site (Grinderwald), information on regional variability will be gained from analyses of soil profiles at sites with different parent material.
Early generation plant breeding trials are often laid out according to unreplicated designs. Replicated checks may be used for error control, for example in augmented designs based on an incomplete block design for checks which are augmented with unreplicated entries. Traditional augmented designs require considerable resources to be spent on genotypes that are not themselves of interest. Therefore, it has been suggested to replace checks with partially replicated entries, leading to so-called prep designs. In the present proposal we suggest combining both ideas to develop what we call augmented prep designs. A non-trivial design problem arises when trials are to be performed at multiple locations. The main challenge then is how to augment the blocks so as to balance the number of pairwise concurrences. This task can be tackled in different ways based on the use (-arrays which are well-known as the basis for (-designs in fully replicated experiments. Furthermore, we also explore the refinement of designs when analysis by spatial models is envisioned. Robustness of the designs to the presence of genotype-environment interaction is also investigated.
Salinity reduces the productivity of cucumber (Cucumis sativus L.) through osmotic and ionic effects. For given atmospheric conditions we hypothesize the existence of an optimal canopy structure at which water use efficiency is maximal and salt accumulation per unit of dry matter production is minimal. This canopy structure optimum can be predicted by integrating physiological processes over the canopy using a functional-structural plant model (FSPM). This model needs to represent the influence of osmotic stress on plant morphology and stomatal conductance, the accumulation of toxic ions and their dynamics in the different compartments of the system, and their toxic effects in the leaf. Experiments will be conducted to parameterize an extended cucumber FSPM. In in-silico experiments with the FSPM we attempt to identify which canopy structure could lead to maximum long-term water use efficiency with minimum ionic stress. The results from in-silico experiments will be evaluated by comparing different canopy structures in greenhouses. Finally, the FSPM will be used to investigate to which extent the improvement of individual mechanisms of salt tolerance like reduced sensitivity of stomatal conductance or leaf expansion can contribute to whole-plant salt tolerance.
The aim of P2 within the Research Unit 'The Forgotten Part of Carbon Cycling: Organic Matter Storage and Turnover in Subsoils (SUBSOM)' is to contribute to the understanding of the different sources and stabilization processes of subsoil organic matter. This will be achieved by the analysis of the soil organic matter composition in topsoil versus subsoil by 13C NMR spectroscopy in bulk soils as well as organo-mineral associations. This will be done on a number of soil profiles differing in parent material and mineralogy and therefore also in the relevance of organo-mineral associations for subsoil C stabilization. In addition, a specific sampling approach will allow to differentiate three zones associated with the dominating effect of (1) leaching of DOC (the 'bulk soil' between trees), (2) root litter decomposition (the 'root-affected zone'), and (3) direct rhizodeposition of root exudates (the 'rhizosphere' sensu strictu). The contribution of above-ground versus below-ground litter is differentiated by the analysis of cutin and suberin biomarkers. Organic matter derived from microbial sources will be identified by the microbial signature of polysaccharides in the subsoil through the analysis of neutral sugars and amino sugars. Organo-mineral associations will be further characterized by N2-BET analyses to delineate the coverage of the mineral phase with organic matter. With these analyses and our specific analytical expertise at the submicron scale (nanoSIMS) we will participate in selected joint experiments of the research unit.
LA-ICP-MS data from three different experiments including five foraminiferal species: Ammonia confertitesta (Bourgenuf, France), Bulimina marginata, Cassidulina laevigata (Gullmard Fjord, Sweden), Amphistegina lessonii and Operculina ammonoides (Eilat, Israel). Foraminifera were cultured at different oxygen concentrations (30% and 100% oxygen saturation). Element to calcium ratio (E/Ca) and partition coefficients (D) of Mg, Mn and Sr are noted for individual laser ablation measurements per specimen.
The formation of biogeochemical interfaces in soils is controlled, among other factors, by the type of particle surfaces present and the assemblage of organic matter and mineral particles. Therefore, the formation and maturation of interfaces is studied with artificial soils which are produced in long-term biogeochemical laboratory incubation experiments (3, 6, 12, 18 months. Clay minerals, iron oxides and charcoal are used as major model components controlling the formation of interfaces because they exhibit high surface area and microporosity. Soil interface characteristics have been analyzed by several groups involved in the priority program for formation of organo-mineral interfaces, sorptive and thermal interface properties, microbial community structure and function. Already after 6 months of incubation, the artificial soils exhibited different properties in relation to their composition. A unique dataset evolves on the development and the dynamics of interfaces in soil in the different projects contributing to this experiment. An integrated analysis based on a conceptual model and multivariate statistics will help to understand overall processes leading to the biogeochemical properties of interfaces in soil, that are the basis for their functions in ecosystems. Therefore, we propose to establish an integrative project for the evaluation of data obtained and for publication of synergistic work, which will bring the results to a higher level of understanding.
During the first project period we developed a general approach to quantify soil pore structure based on X-ray micro-tomography Vogel et al. (2010) which is applicable at various scales to cover soil pores larger that 0.05 mm in a representative way. Based on this method we generated equivalent network models to numerically simulate flow and transport of dissolved chemicals. The existing network model was extended to handle reactive transport and infiltration processes which are especially critical for matter flux in soil. The results were compared to experimental findings. The original research question 'what does a particle see on its way through soil' could be answered quantitatively for various boundary conditions including steady state flux and infiltration. However, we identified various critical aspects of the proposed modeling concept which will be in the focus of the second period. This includes 1) the spatial arrangement of interfaces having different quality which is crucial for chemical interactions and pore scale water dynamics, 2) the realistic multiphase dynamics at the pore scale which need to reflect the dynamic pressure and movement of trapped non-wetting phase and 3) the parametrization of structural complexity which need to be developed beyond the measurement of continuous Minkowski functions to allow the development of quantitative relations between structure and function. These aspects will be explored in a joint experiments in cooperation with partners within the SPP.
The basidiomycete Armillaria mellea s.l. is one of the most important root rot pathogens of forest trees and comprises several species. The aim of the project is to identify the taxa occurring inSwitzerland and to understand their ecological behaviour. Root, butt and stem rots caused by different fungi are important tree diseases responsible for significant economic losses. Armillaria spp. occur world-wide and are important components of many natural and managed forest ecosystems. Armillaria spp. are known saprothrophs as well as primary and secondary pathogens causing root and butt rot on a large number of woody plants, including forest and orchard trees as well as grape vine and ornamentals. The identification of several Armillaria species in Europe warrants research in the biology and ecology of the different species. We propose to study A. cepistipes for the following reasons. First, A. cepistipes is dominating the rhizomorph populations in most forest types in Switzerland. This widespread occurrence contrasts with the current knowledge about A. cepistipes, which is very limited. Second, because the pathogenicity of A. cepistipes is considered low this fungus has the potential for using as an antagonist to control stump colonising pathogenic fungi, such as A. ostoyae and Heterobasidion annosum. This project aims to provide a better understanding of the ecology of A. cepistipes in mountainous Norway spruce (Picea abies) forests. Special emphasis will be given to interactions of A. cepistipes with A. ostoyae, which is a very common facultative pathogen and which often co-occurs with A. cepistipes. The populations of A. cepistipes and A. ostoyae will be investigated in mountainous spruce forests were both species coexist. The fungi will be sampled from the soil, from stumps and dead wood, and from the root system of infected trees to determine the main niches occupied by the two species. Somatic incompatibility will be used to characterise the populations of each species. The knowledge of the spatial distribution of individual genets will allow us to gain insights into the mode of competition and the mode of spreading. Inoculation experiments will be used to determine the variation in virulence expression of A. cepistipes towards Norway spruce and to investigate its interactions with A. ostoyae.
The relevance of biogeochemical gradients for turnover of organic matter and contaminants is yet poorly understood. This study aims at the identification and quantification of the interaction of different redox processes along gradients. The interaction of iron-, and sulfate reduction and methanogenesis will be studied in controlled batch and column experiments. Factors constraining the accessibility and the energy yield from the use of these electron acceptors will be evaluated, such as passivation of iron oxides, re-oxidation of hydrogen sulfide on iron oxides. The impact of these constraints on the competitiveness of the particular process will then be described. Special focus will be put on the evolution of methanogenic conditions in systems formerly characterized by iron and sulfate reducing condition. As methanogenic conditions mostly evolve from micro-niches, methods to study the existence, evolution and stability of such micro-niches will be established. To this end, a combination of Gibbs free energy calculations, isotope fractionation and tracer measurements, and mass balances of metabolic intermediates (small pool sizes) and end products (large pool sizes) will be used. Measurements of these parameters on different scales using microelectrodes (mm scale), micro sampling devices for solutes and gases (cm scale) and mass flow balancing (column/reactor scale) will be compared to characterize unit volumes for organic matter degradation pathways and electron flow. Of particular interest will be the impact of redox active humic substances on the competitiveness of involved terminal electron accepting processes, either acting as electron shuttles or directly providing electron accepting capacity. This will be studied using fluorescence spectroscopy and parallel factor analysis (PARAFAC) of the gained spectra. We expect that the results will provide a basis for improving reactive transport models of anaerobic processes in aquifers and sediments.
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