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The basidiomycete Armillaria mellea s.l. is one of the most important root rot pathogens of forest trees and comprises several species. The aim of the project is to identify the taxa occurring inSwitzerland and to understand their ecological behaviour. Root, butt and stem rots caused by different fungi are important tree diseases responsible for significant economic losses. Armillaria spp. occur world-wide and are important components of many natural and managed forest ecosystems. Armillaria spp. are known saprothrophs as well as primary and secondary pathogens causing root and butt rot on a large number of woody plants, including forest and orchard trees as well as grape vine and ornamentals. The identification of several Armillaria species in Europe warrants research in the biology and ecology of the different species. We propose to study A. cepistipes for the following reasons. First, A. cepistipes is dominating the rhizomorph populations in most forest types in Switzerland. This widespread occurrence contrasts with the current knowledge about A. cepistipes, which is very limited. Second, because the pathogenicity of A. cepistipes is considered low this fungus has the potential for using as an antagonist to control stump colonising pathogenic fungi, such as A. ostoyae and Heterobasidion annosum. This project aims to provide a better understanding of the ecology of A. cepistipes in mountainous Norway spruce (Picea abies) forests. Special emphasis will be given to interactions of A. cepistipes with A. ostoyae, which is a very common facultative pathogen and which often co-occurs with A. cepistipes. The populations of A. cepistipes and A. ostoyae will be investigated in mountainous spruce forests were both species coexist. The fungi will be sampled from the soil, from stumps and dead wood, and from the root system of infected trees to determine the main niches occupied by the two species. Somatic incompatibility will be used to characterise the populations of each species. The knowledge of the spatial distribution of individual genets will allow us to gain insights into the mode of competition and the mode of spreading. Inoculation experiments will be used to determine the variation in virulence expression of A. cepistipes towards Norway spruce and to investigate its interactions with A. ostoyae.
In the Earth, the dynamo action is strongly linked to core freezing. There is a solid inner core, the growth of which provides a buoyancy flux that drives the dynamo. The buoyancy in this case derives from a difference in composition between the solid inner core and the fluid outer core. In planetary bodies smaller than the Earth, however, this core differentiation process may differ - Fe may precipitate at the core-mantle boundary (CMB) rather than in the center and may fall as iron snow and initially remelt with greater depth. A chemical stable sedimentation zone develops that comprises with time the entire core - at that time a solid inner core starts to grow. The dynamics of this system is not well understood and also whether it can generate a magnetic field or not. The Jovian moon Ganymede, which shows a present-day magnetic dipole field, is a candidate for which such a scenario has been suggested. We plan to study this Fe-snow regime with both a numerical and experimental approach. In the numerical study, we use a 2D/3D thermo-chemical convection model that considers crystallization and sinking of iron crystals together with the dynamics of the liquid core phase (for the 3D case the influence of the rotation of the Fe snow process is further studied).The numerical calculations will be complemented by two series of experiments: (1) investigations in metal alloys by means of X-ray radioscopy, and (2) measurements in transparent analogues by optical techniques. The experiments will examine typical features of the iron snow regime. On the one hand they will serve as a tool to validate the numerical approach and on the other hand they will yield important insight into sub-processes of the iron snow regime, which cannot be accessed within the numerical approach due to their complexity.
Cherry leaf roll virus (CLRV) is a plant pathogen of economic and ecologic importance. It is globally distributed in a wide range of forest, fruit, and ornamental trees and shrubs. In several areas of cherry and walnut production CLRV causes severe losses in yield and quality. With current reference to the rapid dissemination and strong symptom expression in Finnish birches and the Germany-wide distribution of CLRV in birches and elderberry, we continuously investigate and gradually reveal CLRV transmission pathways as by pollen, seeds or water. However, modes and interactions responsible for the wide intergeneric host transmission as well as for the exceptional CLRV epidemic in Fennoscandia still remain unknown. In this project systematic studies shall investigate biological vectors as a causal agent to finally derive control mechanisms and strategies to avoid new epidemics in different hosts and geographic regions. Detailed monitoring of the invertebrate fauna of birch stands/forests and elderberry plantations in Germany and Finland shall reveal potential vectors to subsequently study them in detail by approved virus detection methods and transmission experiments. Molecular analyses of the CLRV coat protein shall prove its role as a viral determinant for a virus/vector interaction. Consequently, this project essentially will contribute important answers on the CLRV epidemiology, and this will be a key element within the first network of research on plant viral pathogens in forest trees.
Arsenic-contaminated ground- and drinking water is a global environmental problem with about 1-2Prozent of the world's population being affected. The upper drinking water limit for arsenic (10 Micro g/l) recommended by the WHO is often exceeded, even in industrial nations in Europe and the USA. Chronic intake of arsenic causes severe health problems like skin diseases (e.g. blackfoot disease) and cancer. In addition to drinking water, seafood and rice are the main reservoirs for arsenic uptake. Arsenic is oftentimes of geogenic origin and in the environment it is mainly bound to iron(III) minerals. Iron(III)-reducing bacteria are able to dissolve these iron minerals and therefore release the arsenic to the environment. In turn, iron(II)-oxidizing bacteria have the potential to co-precipitate or sorb arsenic during iron(II)- oxidation at neutral pH followed by iron(III) mineral precipitation. This process may reduce arsenic concentrations in the environment drastically, lowering the potential risk for humans dramatically.The main goal of this study therefore is to quantify, identify and isolate anaerobic and aerobic Fe(II)-oxidizing microorganisms in arsenic-containing paddy soil. The co-precipitation and thus removal of arsenic by iron mineral producing bacteria will be determined in batch and microcosm experiments. Finally the influence of rhizosphere redox status on microbial Fe oxidation and arsenic uptake into rice plants will be evaluated in microcosm experiments. The long-term goal of this research is to better understand arsenic-co-precipitation and thus arsenic-immobilization by iron(II)-oxidizing bacteria in rice paddy soil. Potentially these results can lead to an improvement of living conditions in affected countries, e.g. in China or Bangladesh.
Existing models of soil organic matter (SOM) formation consider plant material as the main source of SOM. Recent results from nuclear magnetic resonance analyses of SOM and from own incubation studies, however, show that microbial residues also contribute to a large extent to SOM formation. Scanning electron microscopy showed that the soil mineral sur-faces are covered by numerous small patchy fragments (100 - 500 nm) deriving from microbial cell wall residues. We will study the formation and fate of these patchy fragments as continuously produced interfaces in artificial soil systems (quartz, montmorillonite, iron oxides, bacteria and carbon sources). We will quantify the relative contributions of different types of soil organisms to patchy fragment formation and elucidate the effect of redox con-ditions and iron mineralogy on the formation and turnover of patchy fragments. The develop-ment of patchy fragments during pedogenesis will be followed by studying soil samples from a chronosequence in the forefield of the retreating Damma glacier. We will characterize chemical and physical properties of the patchy fragments by nanothermal analysis and microscale condensation experiments in an environmental scanning electron microscope. The results will help understanding the processes at and characteristics of biogeochemical interfaces.
In forest ecosystems ectomycorrhizal fungi are responsible for the mobilization of mineral nutrients from soil organic matter (SOM) resulting in a marked increase in productivity of their symbiotic host plants. In return the fungi obtain a significant amount of photosynthetic products from these plants, allowing the formation of an extensive hyphal system. These hyphae constitute a major part of soil biomass and, ultimately, a major source for SOM formation. While plant-fungal nutrient exchange has been analyzed extensively, this proposal is focused on the fungal contribution to SOM formation and on the processes leading to the acquisition of nutrients by the fungi. These two processes will be studied separately and in a quantitative way using isotopic labeling in soil bioreactors. Analysis of the fate of 13C labeled fungal material (Laccaria bicolor) in soil bioreactors will tell how fast and to what extent the various fractions of hyphal biomass are transformed into non-living SOM. As potential molecular or structural markers for SOM formation from fungal hyphae we will analyze characteristic remnants of fungal hyphae in SOM using scanning electron microscopy, DNAfragments using a PCR approach for the fungal rRNA internal transcribed spacerregions and biochemical markers like fatty acids and ergosterol. The impact of ectomycorrhizal mycelia supported by Pinus sylvestris plantlets on 13C- and 15N-labeled SOM and on microbial biomass will be analyzed in separate soil bioreactor experiments.
The proposal addresses the potential of subsoil to contribute to K nutrition of crops. More specifically we will address the processes controlling release of K from interlayer of 2:1 clay minerals as this is expected to be the dominant K fraction in the subsoil. While it has been shown in the past that this so called 'non-exchangeable' K can be released due to root activity, there are controversial results concerning the role of soil solution K concentration in the rhizosphere required to trigger the process. Likewise little information is available about the concentration dynamics of other cations (NH4, Ca) in the rhizosphere and their impact on K release and vermiculitization supposed to be associated with this process. Model studies with substrate from the central field trial will be conducted in compartment systems equipped with micro suction cups. The measurement of dynamic changes of soil solution composition with increasing distance from the root surface will be combined with investigations of changes in mineralogy by XRD, TEM and SEM-EDX. Changes of mineralogy as a result of plant induced K release from interlayer will also be studied on bulk soil and rhizosphere samples collected within the central field and the central microcosm experiment and with mineral bags exposed in the field during a cropping cycle. Finally, X-ray CT will be used to access changes in soil texture, i.e. clay distribution around roots and the temporal spread of roots in biopores which is a prerequisite for K uptake from such structures.
The sorption of anions in geotechnical multibarrier systems of planned high level waste repositories (HLWR) and of non-ionic and organic pollutants in conventional waste disposals are in the center of recent research. In aquatic systems, persistent radionuclides such as 79Se, 99Tc, 129I exist in a form of anions. There is strongly increasing need to find materials with high sorption capacities for such pollutants. Specific requirements on barrier materials are long-term stability of adsorbent under various conditions such as T > 100 C, varying hydrostatic pressure, and the presence of competing ions. Organo-clays are capable to sorb high amounts of cations, anions and non-polar molecules simultaneously having selectivity for certain ions. This project is proposed to improve the understanding of sorption and desorption processes in organo-clays. Additionally, the modification of material properties under varying chemical and thermal conditions will be determined by performing diffusion and advection experiments. Changes by sorption and diffusion will be analyzed by determining surface charge and contact angles. Molecular simulations on models of organo-clays will be conducted in an accord with experiments with aim to understand and analyze experimental results. The computational part of the project will profit from the collaboration of German partner with the group in Vienna, which has a long standing experience in a modeling of clay minerals.
Die Beobachtungen der Radio Science Experimente Mars Express Radio Science, Mars Global Surveyor Radio Science und Venus Express Radio Science liefern eine sehr große Datenbasis für die Elektronendichteverteilung der Tagionosphäre von Mars und Venus. In der Laufzeit des Original-Antrags erfolgte die Ableitung von Profileigenschaften/Umgebungsparametern und die Entwicklung eines schnellen, flexiblen zeitunabhängigen photochemischen Modells der ionosphärischen Elektronendichte (IonA-1) für Mars (Neutralatmosphäre: Mars Climate Database) und Venus (Neutralatmosphäre: VenusGRAM). Der Vergleich der beobachteten und modellierten MaRS und VeRa Parameter des ionosphärischen Hauptmaximums (M2/V2) ergaben für Mars global eine exzellente Übereinstimmung, aber nicht für Venus (unrealistische VenusGRAM Neutralatmosphäre, Peter et al., 2014). Für die Modellierung kleinskaliger Ionosphärenmerkmale wird jedoch die individuelle Übereinstimmung der jeweiligen M2/V2 Höhen und Breiten benötigt, da dies auf Ähnlichkeiten zwischen realer und Modellatmosphäre zur Zeit der Beobachtung hinweist. Für die Modellierung von Meteorschichten unterhalb der Sekundärschicht M1/V1 wurden Fallstudien mit entsprechenden MaRS Profilen in Kombination mit einem Modell für Meteorschichten (IonA/MSDM) durchgeführt. MSDM berücksichtigt die Deponierung von Mg und Fe in eine Atmosphäre und simuliert die Bildung von Metallionen durch Photoionisation/Ladungsaustausch. Ein zusätzlich entwickeltes hydrostatisches 1D Modell der Neutralatmosphäre für ionosphärischen Höhen (NIA) bildet als flexiblere Neutralatmosphäre mit kleinskaligem Höhengitter die Basis für die Anwendung von IonA auf einen größeren Beobachtungsdatensatz. Die Weiterentwicklung von IonA-1 zu einem zeitabhängigen photochemischen Modell mit komplexem Reaktionsschema (Iona-2) ermöglicht die Modellierung von ionosphärischen Ionen. Der Fortsetzungsantrag soll NIA und IonA-2 koppeln, um ein detaillierteres Verständnis der Wechselwirkung zwischen den Ionosphären und Neutralatmosphären in ionosphärischen Höhen zu erreichen. Die Radio Science Beobachtungen der unteren Neutralatmosphäre erfolgen fast zeitgleich mit den Ionosphärenbeobachtungen und bietet so eine erste Abschätzung der Neutraldichte für NIA. Das gekoppelte Modell der Neutralatmosphäre/Ionosphäre mit konsistenter Berechnung der Neutral, Ionen- und Elektronentemperaturen (a) deckt den transportdominierten Bereich der Ionosphäre oberhalb von M2/V2 ab, (b) liefert eine realistischere Modellierung der Anomalien unterhalb von M1/V1, (c) schätzt den Beitrag der sekundären Ionisation in M1/V1/M2/V2 ab, (d) liefert Erklärungen für den sog. Bulge, eine anomale Anhäufung von Elektronen in der Topside und (e) stellt mögliche Zustände der Neutralatmosphäre in ionosphärischen Höhen während der Beobachtungen zur Verfügung. Der letzte Punkt dient der Weiterentwicklung von globalen Zirkulationsmodellen, besonders für Venus, da die Datenlage im entsprechenden Höhenbereich sehr schlecht ist.
Soil organic matter (SOM) controls large part of the processes occurring at biogeochemical interfaces in soil and may contribute to sequestration of organic chemicals. Our central hypothesis is that sequestration of organic chemicals is driven by physicochemical SOM matrix aging. The underlying processes are the formation and disruption of intermolecular bridges of water molecules (WAMB) and of multivalent cations (CAB) between individual SOM segments or between SOM and minerals in close interaction with hydration and dehydration mechanisms. Understanding the role of these mediated interactions will shed new light on the processes controlling functioning and dynamics of biogeochemical interfaces (BGI). We will assess mobility of SOM structural elements and sorbed organic chemicals via advanced solid state NMR techniques and desorption kinetics and combine these with 1H-NMR-Relaxometry and advanced methods of thermal analysis including DSC, TGADSC- MS and AFM-nanothermal analysis. Via controlled heating/cooling cycles, moistening/drying cycles and targeted modification of SOM, reconstruction of our model hypotheses by computational chemistry (collaboration Gerzabek) and participation at two larger joint experiments within the SPP, we will establish the relation between SOM sequestration potential, SOM structural characteristics, hydration-dehydration mechanisms, biological activity and biogechemical functioning. This will link processes operative on the molecular scale to phenomena on higher scales.
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