In soils and sediments there is a strong coupling between local biogeochemical processes and the distribution of water, electron acceptors, acids, nutrients and pollutants. Both sides are closely related and affect each other from small scale to larger scale. Soil structures such as aggregates, roots, layers, macropores and wettability differences occurring in natural soils enhance the patchiness of these distributions. At the same time the spatial distribution and temporal dynamics of these important parameters is difficult to access. By applying non-destructive measurements it is possible to overcome these limitations. Our non-invasive fluorescence imaging technique can directly quantity distribution and changes of oxygen and pH. Similarly, the water content distribution can be visualized in situ also by optical imaging, but more precisely by neutron radiography. By applying a combined approach we will clarify the formation and architecture of interfaces induces by oxygen consumption, pH changes and water distribution. We will map and model the effects of microbial and plant root respiration for restricted oxygen supply due to locally high water saturation, in natural as well as artificial soils. Further aspects will be biologically induced pH changes, influence on fate of chemicals, and oxygen delivery from trapped gas phase.
Der Beginn der nordhemisphärischen Vereisung und die Entwicklung kontinuierlichen Permafrostes in Eurasien zwischen dem Ende des Miozäns und dem frühen Pleistozän zählt zu den bedeutendsten klimatischen Ereignissen des Känozoikums. Der Zeitpunkt extensiver Vereisung auf den Kontinenten und des Arktischen Ozeans und damit verbundene Veränderungen der klimatischen Bedingungen bleibt bislang ungenau bestimmt.Speläotheme (sekundäre Höhlenkarbonate) stellen ein wichtiges Archiv kontinentaler Umweltbedingungen dar, welches durch besonders genaue radiometrische Altersmodelle für eine grosse Bandbreite an Paläoklimaproxies charakterisiert ist.Wir konnten erfolgreich diagenetisch unveränderte und datierbare Proben aus Zentral- und Nordsibirien identifizieren und schlagen eine Multi-proxy-Studie an U/Pb-datierten Stalagmiten vor. Diese Studie wird Einblicke in die thermalen und hydrologischen Bedingungen zwischen 10.3 Ma und 8 Ma liefern. Wasser aus in den Speläothemen eingeschlossenen Fluidinklusionen wird auf seine Isotopenzusammensetzung hin untersucht. Zudem wird die in den Speläothemen beobachtete Lamination genutzt, um die Saisonalität während des Torton und Messiniums zu rekonstruieren. Wir suchen finanzielle Unterstützung für die parallele Analyse der Isotopie des Fluidinklusionswassers, der Sauerstoff- und Kohlenstoffisotopie des Karbonates, und der Elementkonzentration in den Speläothemen. Diese Kombination geochemischer Methoden wird Einblicke in regionale Umweltbedingungen, die Niederschlagshistorie und Temperaturen während des Miozäns und vor der Entwicklung kontinuierlichen Permafrostes geben. Zusätzliche Proben werden genutzt, um den Wechsel vom eisfreien zu einem durch Permafrost charakterisierten Sibirien zeitlich genauer einzugrenzen.Das vorgeschlagene Projekt wird unser Wissen zur atmosphärischen Zirkulation, und daran geknüpfter Veränderungen des Feuchte- und Temperaturregimes während eines saisonal eisfreien Arktischen Ozeans erweitern.
It has been suggested that dying and decaying fine roots and root exudation represent important, if not the most important, sources of soil organic carbon (SOC) in forest soils. This may be especially true for deep-reaching roots in the subsoil, but precise data to prove this assumption are lacking. This subproject (1) examines the distribution and abundance of fine roots (greater than 2 mm diameter) and coarse roots (greater than 2 mm) in the subsoil to 240 cm depth of the three subsoil observatories in a mature European beech (Fagus sylvatica) stand, (2) quantifies the turnover of beech fine roots by direct observation (mini-rhizotron approach), (3) measures the decomposition of dead fine root mass in different soil depths, and (4) quantifies root exudation and the N-uptake potential with novel techniques under in situ conditions with the aim (i) to quantify the C flux to the SOC pool upon root death in the subsoil, (ii) to obtain a quantitative estimate of root exudation in the subsoil, and (iii) to assess the uptake activity of fine roots in the subsoil as compared to roots in the topsoil. Key methods applied are (a) the microscopic distinction between live and dead fine root mass, (b) the estimation of fine and coarse root age by the 14C bomb approach and annual ring counting in roots, (c) the direct observation of the formation and disappearance of fine roots in rhizotron tubes by sequential root imaging (CI-600 system, CID) and the calculation of root turnover, (d) the measurement of root litter decomposition using litter bags under field and controlled laboratory conditions, (e) the estimation of root N-uptake capacity by exposing intact fine roots to 15NH4+ and 15NO3- solutions, and (f) the measurement of root exudation by exposing intact fine root branches to trap solutions in cuvettes in the field and analysing for carbohydrates and amino acids by HPLC and Py-FIMS (cooperation with Prof. A. Fischer, University of Trier). The obtained data will be analysed for differences in root abundance and activity between subsoil (100-200 cm) and topsoil (0-20 cm) and will be related to soil chemical and soil biological data collected by the partner projects that may control root turnover and exudation in the subsoil. In a supplementary study, fine root biomass distribution and root turnover will also be studied at the four additional beech sites for examining root-borne C fluxes in the subsoil of beech forests under contrasting soil conditions of different geological substrates (Triassic limestone and sandstone, Quaternary sand and loess deposits).
During the first project period we developed a general approach to quantify soil pore structure based on X-ray micro-tomography Vogel et al. (2010) which is applicable at various scales to cover soil pores larger that 0.05 mm in a representative way. Based on this method we generated equivalent network models to numerically simulate flow and transport of dissolved chemicals. The existing network model was extended to handle reactive transport and infiltration processes which are especially critical for matter flux in soil. The results were compared to experimental findings. The original research question 'what does a particle see on its way through soil' could be answered quantitatively for various boundary conditions including steady state flux and infiltration. However, we identified various critical aspects of the proposed modeling concept which will be in the focus of the second period. This includes 1) the spatial arrangement of interfaces having different quality which is crucial for chemical interactions and pore scale water dynamics, 2) the realistic multiphase dynamics at the pore scale which need to reflect the dynamic pressure and movement of trapped non-wetting phase and 3) the parametrization of structural complexity which need to be developed beyond the measurement of continuous Minkowski functions to allow the development of quantitative relations between structure and function. These aspects will be explored in a joint experiments in cooperation with partners within the SPP.
The project investigates light absorption in thin film silicon solar cells, one of the leading technologies for the generation of low cost of renewable energy. Because silicon is a rather weak absorber, light scattering at interface textures is used to enhance the absorption. Understanding of light scattering and the corresponding absorption enhancement in the device represents a scientific challenge that spans optics, device physics and material science. Among the textures used so far, solar cell technology makes use almost exclusively of random structures that develop during the growth of on of the of supporting films or the substrate. The idea of the project is, to understand the details of the scattering event, and ideally to propose more appropriate surface structures than the existing ones. Therefore, it is intended to develop new processes for controlled surface modifications, and to develop new modelling tools for numeric analysis and understanding.
Small molecule natural products are a prolific source of inspiration for the development of new drugs, and essential tools in basic biomedical research as probes of biological functions. The contribution of academic laboratories in natural products discovery has been essential. The limiting factor of traditional approaches in bioactivity-directed natural product research has been the tedious process of purification and identification of active molecules from a highly complex extract matrix. Recent technological advances enable substantial improvements in efficiency via a consequential miniaturization of the screening and discovery process, and automation of certain process steps. The aim of the project is to discover small molecule natural products leads from plants and fungi acting against clinically relevant and/or emerging targets in important disease areas. The targets have been selected on the basis of specific criteria, such as (i) novelty and importance of target; (ii) lack of specific/selective inhibitors; (iii) need for enhancement of structural diversity of ligands; (iv) difficulty/impossibility to use rational drug discovery approaches; (v) access to animal models. Indications include CNS (selective GABA-A receptor agonists), inflammation and cancer (modulation of angiogenesis and lymphangiogenesis, inhibition of PI3 kinases). In addition, a screening for hERG channel inhibition will be carried out as the currently most critical anti-target in drug discovery & development. An extract library and a technology platform for the miniaturized discovery of natural products will be used. The library consists of currently 1000 plant and fungal extracts. An ethnomedicine-based focussed sub-library will be specifically tested for GABAA receptor agonistic properties. All process steps in the screening and consecutive lead identification are miniaturized, in part automated, and based on the 96-well microtiter footprint. Most of the assays are via external collaborations, and some assays involving cell signalling are established in-house. Prioritized extracts are submitted to HPLC-based activity profiling with microtiter-based fractionation of column effluent, and simultaneous on-line spectroscopic (PDA, ion-trap ESI and APCI-MS, and ESI-TOF) analysis. Compound dereplication and identification is supported by off-line microprobe NMR spectroscopy. Around the active target molecules, structurally related compounds will be characterized to generate small 'virtual' libraries for preliminary structure activity relationships. Calculation of physico-chemical data and secondary bioassays will characterize leads, and shortlisted compounds will be tested in vivo for proof of concept. For this purpose, compounds of interest are isolated in a targeted manner in amounts of up to several hundred mg.
Global biodiversity is declining at an alarming rate and traditional conservation areas are no longer sufficient to slow this decline, so the potential contribution of managed land for conservation is increasingly acknowledged. This includes a broadening of the perspective from the field and farm to the landscape level, considering the often neglected spatial and temporal turnover in anthropogenic mosaic landscapes. Here we will use a highly replicated study design with the experimental exposure of standardized nesting resources to examine the relative importance of habitat type to landscape diversity using trap-nesting bees, wasps and their natural enemies. We will analyze the scale-dependence of partitioned biodiversity and quantify host-parasitoid and prey-predator interactions, as well as make food web statistics with a fully quantified interaction web (following Tylianakis et al. 2007, Nature 445: 2002-5). We will show how the major habitat types in our mosaic landscapes (and different years) contribute to overall species richness, comparing wheat, oilseed rape, grassland, field margin strips, fallows and forest margins, which represent a gradient of anthropogenic disturbance. We will examine how landscape composition influences the relative contribution of the six habitat types to species richness by focusing on a gradient of simple to complex structured landscapes. Further, we expect enemy richness to be related to host/prey mortality, so we will contribute to this highly debated topic. The mosaic structure of agricultural landscapes allow to study little known effects of landscape configuration, including spillover effects across habitats, inhibition of dispersal (by hostile cereal fields) and facilitation (by grassy corridors). Experiments with marked bee and wasp individuals allow to describe foraging behaviour and resource use across habitats.
Introduction: In aquatic systems, the bioavailability of a compound is dependent on numerous factors such as partitioning between water, different organisms and solids, biotransformation and food web transfer. This project dealt with the fate of an important environmental xeno-estrogen, 17-ethinylestradiol (EE2), in the aquatic environment. Therefore, the kinetics of EE2 in indicator species representing the different trophic levels of an ecosystem were assessed. As primary producers, green algae (Desmodesmus suspicatus) were selected. The water flea Daphnia magna and larvae of the midge Chironomus riparius were introduced as primary consumers of the water phase and the sediment, respectively. Finally, water as well as dietary uptake of EE2 were investigated in a target species and secondary consumer: zebrafish (Danio rerio). Methodology: In a first series of experiments, uptake of 14C-labelled EE2 (14C-EE2) from the water phase and elimination by the different organisms were investigated over time. In a second test series, both primary consumers were fed 14C-EE2 spiked algae in order to study bioaccumulation. Uptake of 14C-EE2 by chironomid larvae after water and sediment spiking was compared, including sediments of different composition. In a third series of experiments, male fish were short term (48 h) exposed to 14C-EE2 through different routes: by water exposure (WE) and by dietary exposure (DE) via both contaminated daphnids and chironomid larvae. Distribution of 14C-EE2 in the fish was studied by measuring the amount of radioactivity (RA) in the different fish tissues. Additionally, the effect of EE2 on the vitellogenin (Vtg) induction in male fish was compared after WE and DE in a long term (14 d) experiment. The RA in liquid samples was quantified by means of liquid scintillation counting (LSC). Solid samples were subjected to combustion in a biological oxidiser, trapping (14)CO2, measured with LSC. Water and organism extracts were analysed by means of HPLC with a radiodetector, except for algae extracts that were subjected to TLC. Metabolites were identified with GC-MS, high resolution LC-MS and enzymatic hydrolysis followed by HPLC with radiodetection. Metabolites, detected in the water phase, were tested for estrogenic activity by means of YES and ER-CALUX assays. Results: Accumulation and effects: Of the four organisms mentioned above, bioconcentration of 14C-EE2 was highest in the algae. Whereas the growth rate of D. subspicatus was significantly affected at high EE2 concentrations compared to unexposed algae, EE2 had no acute effects on D. magna and C. riparius. Daphnids showed a higher bioaccumulation potential after exposure via spiked algae. For chironomids, water exposure was the predominant uptake route. The presence of sediment lowered the bioavailability of 14C-EE2 to the larvae after both water and sediment spiking. Nevertheless, uptake was higher when the nutritional quality of the sediment was better. Etc.
In this study important processes determining the compositional biodiversity of forest stands are investigated. The central goal is to find out the mechanisms leading to a certain biodiversity after natural and management disturbances. In the national park Bayerischer Wald experimental plots in forest stands with different disturbance regime are selected: - untouched for a long time, - Norway Spruce killed by bark beetle, - single tree selection silviculture - clearcut on small areas (up to 1 ha). Three important organismic groups are under study: beetles, fungi and plants. The first group is investigated by the Chair of Applied Zoology, the second by the Division of Systematic Botany. In the teaching unit Geobotany the effect of small scale soil disturbances on diversity of the ground vegetation is examined. Experimental plots of 0,5 m2 are digged up and the reaction of the vegetation is monitored for two years. Exposed mineral soil is a favourable site for germination and establishment for many species of the species pool. Thus soil disturbances may have a positive effect on species richness. The soil seed bank plays an important role for vegetation regeneration after disturbance. Therefore soil samples are taken and cultivated in a greenhouse. It is hypothesised that the soil seed bank is richer in seed and species number in managed forests than in those forests without direct human influence. To monitor seed rain we expose seed traps in the summer season. Light is an important trigger for the germination of species. Linking the reaction to soil disturbances under different light conditions to the biodiversity of the community helps to widen our understanding of the effect of disturbance regime on biological diversity. The comparison of unmanaged to managed forests enables us to contribute important aspects to the discussion on the effect of forest management on biological diversity.
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