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Molecular determinants of host specificity of maize-, rice- and mango-pathogenic species of the genus Fusarium

Fusarium species of the Gibberella fujikuroi species complex cause serious diseases on different crops such as rice, wheat and maize. An important group of plant pathogens is the Gibberella fujikuroi species complex (GFC) of closely related Fusarium species which are associated with specific hosts; F. verticillioides and F. proliferatum are particularly associated with maize where they can cause serious ear-, root-, and stalk rot diseases. Two other closely related species of the GFC, F. mangiferae and F. fujikuroi, which share about 90Prozent sequence identity with F. verticillioides, are pathogens on mango and rice, respectively. All of these species produce a broad spectrum of secondary metabolites such as phytohormones (gibberellins, auxins, and cytokinins), and harmful mycotoxins, such as fumonisin, fusarin C, or fusaric acid in large quantities. However, the spectrum of those mycotoxins might differ between closely related species suggesting that secondary metabolites might be determinants for host specificity. In this project, we will study the potential impact of secondary metabolites (i.e. phytohormones and certain mycotoxins) and some other species-specific factors (e.g. species-specific transcription factors) on host specificity. The recently sequenced genomes of F. mangiferae and F. fujikuroi by our groups and the planned sequencing of F. proliferatum will help to identify such determinants by genetic manipulation of the appropriate metabolic pathway(s).

Biogeochemical interface formation in soils as controlled by different components

We consider clay minerals, iron oxides and charcoal as major components controlling the formation of interfaces relevant for sorption of organic chemicals, as they control the assemblage of organic matter and mineral particles. We studied the formation of interfaces in batch incubation experiments with inoculated artificial soils consisting of model compounds (clay minerals, iron oxide, char) and natural soil samples. Results show a relevant contribution of both iron oxides and clay minerals to the formation of organic matter as sorptive interfaces for hydrophobic compounds. Thus, we intend to focus our work in the second phase on the characterization of the interface as formed by organic matter associated with clay minerals and iron oxides. The interfaces will be characterized by the BET-N2 and ethylene glycol monoethyl ether (EGME) methods and 129Xe and 13C NMR spectroscopy for determination of specific surface area, sorptive domains in the organic matter and microporosity. A major step forward is expected by the analysis of the composition of the interface at different resolution by reflected-light microscopy (mm scale), SEM (scanning electron microscopy, micrometer scale) and secondary ion mass spectrometry at the nanometer scale (nanoSIMS). The outcomes obtained in combination with findings from cooperation partners will help to unravel the contribution of different types of soil components on the formation and characteristics of the biogeochemical interfaces and their effect on organic chemical sorption.

Species discrimination of plant roots by Fourier transform infrared (FTIR) spectroscopy

Comprehension of belowground competition between plant species is a central part in understanding the complex interactions in intercropped agricultural systems, between crops and weeds as well as in natural ecosystems. So far, no simple and rapid method for species discrimination of roots in the soil exists. We will be developing a method for root discrimination of various species based on Fourier Transform Infrared (FTIR)-Attenuated Total Reflexion (ATR) Spectroscopy and expanding its application to the field. The absorbance patterns of FTIR-ATR spectra represent the chemical sample composition like an individual fingerprint. By means of multivariate methods, spectra will be grouped according to spectral and chemical similarity in order to achieve species discrimination. We will investigate pea and oat roots as well as maize and barnyard grass roots using various cultivars/proveniences grown in the greenhouse. Pea and oat are recommendable species for intercropping to achieve superior grain and protein yields in an environmentally sustainable manner. To evaluate the effects of intercropping on root distribution in the field, root segments will be measured directly at the soil profile wall using a mobile FTIR spectrometer. By extracting the main root compounds (lipids, proteins, carbohydrates) and recording their FTIR-ATR spectra as references, we will elucidate the chemical basis of species-specific differences.

Eine systematische Übersicht über Fragebögen aus Lärmwirkungsstudien

In Fragebogen-Untersuchungen zur Lärmwirkung wurden bisher sehr unterschiedliche Operationalisierungen von Wirkungsvariablen (wie z.B. Belästigung, Störung von Aktivitäten) und außer-akustischen Faktoren (sog. Moderatoren wie z.B. Lärmempfindlichkeit, misfeasance) verwendet. Deshalb hat sich die Arbeitsgruppe community response der International Commission on the Biological Effects of Noise (ICBEN, Team No. 6) als langfristiges Ziel die Entwicklung von Fragebogen-Guidelines und die Formulierung eines Muster-Fragebogens für die Lärmwirkungsforschung gesetzt. D.h. es soll ein Vorschlag erarbeitet werden, in welcher Form globale und spezifische Lärmwirkungen in Befragungen erhoben werden sollten. Um dieses Vorhaben zu unterstützen, hat der Arbeitskreis Ökologische Lärmforschung die Erstellung einer systematischen Übersicht über vorhandene Fragebögen aus Lärmwirkungsstudien auf internationaler Ebene in Angriff genommen. Diese Übersicht soll es u.a. ermöglichen, die Struktur von verschiedenen Fragebögen sowie die in ihnen verwendeten Operationalisierungen für Lärmwirkungs- und Moderatorvariablen (hinsichtlich Art der Frageformulierung sowie der Antwortformate) zu vergleichen. Für den/die einzelne/n Lärmforscher/in bietet diese Übersicht die Möglichkeit, sich auf sehr effiziente Art und Weise darüber zu informieren, wie bestimmte Konstrukte in bisherigen Untersuchungen operationalisiert worden sind bzw. welche Alternativen zu den bereits selbst angewandten Operationalisierungen bestehen. Nach einer systematischen Ermittlung von Namen und Adressen einschlägiger Lärmforscher/innen, wurden diese um die Zusendung von Fragebögen sowie ergänzender Materialien aus eigenen Lärmwirkungsstudien gebeten. Die zugesandten Fragebögen werden gegebenenfalls übersetzt und mit der Methode der qualitativen Inhaltsanalyse ausgewertet. Hierbei werden die Fragebögen im Hinblick auf formelle Aspekte (z.B. Jahr der Erhebung, Sprache, Art der Befragungsmethode) wie auch im Hinblick auf strukturelle Aspekte (z.B. Umfang des Fragebogens, abgefragte Variablengruppen, Antwortformate) ausgewertet. Hauptgegenstand der Auswertung ist aber insbesondere die Auswertung der Lärmwirkungsvariablen (z.B. die Abfrage der globalen Lärmbelästigung, Aktivitätenstörungen, Kommunikationsstörungen) sowie der Moderatorvariablen (z.B. Lärmempfindlichkeit, Lärmbewältigungsvermögen, misfeasance). Parallel dazu wurde eine Datenbank entwickelt, in der die Ergebnisse der Analysen dargestellt und verwaltet werden. Diese Datenbank wird ab November 2001 im Internet unter http://www.eco.psy.ruhr-uni-bochum.de/nqd für jede/n interessierte/n Forscher/in zugänglich und nutzbar sein. Langfristig ist darüber hinaus geplant, ein Archiv mit den Original-Fragebögen aufzubauen, in dem einzelne Fragebögen auf Wunsch eingesehen werden können.

Organic matter composition in the subsoil: Contribution of root litter and microbial-derived compounds

The aim of P2 within the Research Unit 'The Forgotten Part of Carbon Cycling: Organic Matter Storage and Turnover in Subsoils (SUBSOM)' is to contribute to the understanding of the different sources and stabilization processes of subsoil organic matter. This will be achieved by the analysis of the soil organic matter composition in topsoil versus subsoil by 13C NMR spectroscopy in bulk soils as well as organo-mineral associations. This will be done on a number of soil profiles differing in parent material and mineralogy and therefore also in the relevance of organo-mineral associations for subsoil C stabilization. In addition, a specific sampling approach will allow to differentiate three zones associated with the dominating effect of (1) leaching of DOC (the 'bulk soil' between trees), (2) root litter decomposition (the 'root-affected zone'), and (3) direct rhizodeposition of root exudates (the 'rhizosphere' sensu strictu). The contribution of above-ground versus below-ground litter is differentiated by the analysis of cutin and suberin biomarkers. Organic matter derived from microbial sources will be identified by the microbial signature of polysaccharides in the subsoil through the analysis of neutral sugars and amino sugars. Organo-mineral associations will be further characterized by N2-BET analyses to delineate the coverage of the mineral phase with organic matter. With these analyses and our specific analytical expertise at the submicron scale (nanoSIMS) we will participate in selected joint experiments of the research unit.

Forschergruppe (FOR) 986: Structural Change in Agriculture, How should Model Linkages be designed to analyze the Effects of Global Agricultural Trade Liberalization at the Farm Level?

In the last decades agricultural policy has gained increasingly in complexity. Nowadays it influences the food and agricultural sector from the global market down to the farm level. Widespread research questions, like the impact of the WTO negotiations on the farm structure, most often require comprehensive modeling frameworks. Thus, different types of models are utilized according to their comparative advantages and combined in a strategically useful way to more accurately represent micro and macro aspects of the food and agricultural sector. Consequently, in recent years we have seen an increase in the development and application of model linkages. Given this background, the overall objective of this subproject is a systematic sensitivity analysis of model linkages that gradually involves more and more characteristics of the linkage and the corresponding transfer of results between models. In addition, the project aims to answer the following specific question: How does structural change at the farm level influence aggregate supply and technical progress? Under which conditions is it possible to derive macro-relationships from micro-relationships? How does the aggregation level influence the model results and how can possible problems be overcome? This procedure is used to quantify the effects and to derive conditions for optimal interaction of the connected models. The analysis is based on the general equilibrium model GTAP (Global Trade Analysis Project) and the farm group model FARMIS (Farm Modelling Information System) which are employed in conjunction to analyze the effects of WTO negotiations on the farm level.

Forschergruppe (FOR) 1806: The Forgotten Part of Carbon Cycling: Organic Matter Storage and Turnover in Subsoils (SUBSOM), Biological Regulation of Subsoil C-cycling under Field Conditions

The nature of the microbial communities inhabiting the deeper soil horizons is largely unknown. It is also not clear why subsurface microorganisms do not make faster use of organic compounds under field conditions. The answer could be provided by a reciprocal soil transfer experiment studying the response of transferred soils to fluctuations in microclimate, organic inputs, and soil biota. The subproject P9 will be responsible for the establishment of reciprocal transfer experiments offering a strong link between subgroups interested in organic matter quality, transport of organic substances, as well as functions of the soil microbial community. A single, high molecular weight substrate (13C labelled cellulose) will be applied at two different levels in the pre-experiment to understand the dose-dependent reaction of soil microorganisms in transferred surface and sub-soils. Uniformly 13C labelled beech roots - representing complex substrates - will be used for the main reciprocal soil transfer experiment. We hypothesize that transferring soil cores between subsoil and surface soil as well as addition of labelled cellulose or roots will allow us to evaluate the relative impact of surface/subsurface habitat conditions and resource availability on abundance, function, and diversity of the soil microbial community. The second objective of the subproject is to understand whether minerals buried within different soil compartments (topsoil vs. subsoil) in the field contribute to creation of hot spots of microbial abundance and activity within a period of two to five years. We hypothesize that soil microorganisms colonize organo-mineral complexes depending on their nutritional composition and substrate availability. The existence of micro-habitat specific microbial communities could be important for short term carbon storage (1 to 6 years). The third objective is to understand the biogeography and function of soil microorganisms in different subsoils. Parent material as well as mineral composition might control niche differentiation during soil development. Depending on size and interconnectedness of niches, colonization and survival of soil microbial communities might be different in soils derived from loess, sand, terra fusca, or sandstone. From the methodological point of view, our specific interest is to place community composition into context with soil microbial functions in subsoils. Our subgroup will be responsible for determining the abundance, diversity, und function of soil microorganisms (13C microbial biomass, 13C PLFA, enzyme activities, DNA extraction followed by quantitative PCR). Quantitative PCR will be used to estimate total abundances of bacteria, archaea and fungi as well as abundances of specific groups of bacteria at high taxonomic levels. We will apply taxa specific bacterial primers because classes or phyla might be differentiated into ecological categories on the basis of their life strategies.

Leistungsoptimierte Lithium-lonen Batterien

Der schnelle Fortschritt der elektronischen Geräte erhöht die Nachfrage nach verbesserten Li-Ionen Batterien. Kommerziell erhältliche Li-Zellen nutzen meist Lithiumkobaltoxid für die positive Elektrode. Doch gerade dieses Material ist ein Hindernis für eine weitere Optimierung, insbesondere für eine Kostensenkung. Vor allem für größere Anwendungen wie Hybrid- oder Elektrofahrzeuge müssen alternative Materialen erforscht werden, die billiger, sicherer und umweltverträglicher sind. Daher wird im ISEA derzeit ein neues Forschungsprojekt ins Leben gerufen und die dafür benötigte Infrastruktur geschaffen. Die Forschung wird sich auf die Untersuchung geeigneter Übergangsmetalloxide und Polyanionen konzentrieren, die besonders gut zur Einlagerung von Li-Ionen geeignet sind. Es werden neue Herstellungsverfahren unter Verwendung wässriger Precurser-Substanzen untersucht, die Verbindungen mit überlegenen Eigenschaften erzeugen und außerdem leicht an eine Massenproduktion angepasst werden können. Ziel der Arbeiten ist, preisgünstiges Elektrodenmaterial zu entwickeln, das eine spezifische Energie von über 200 Wh/kg und eine Leistungsdichte von 400 W/kg aufweist. Außerdem werden Arbeiten im Bereich der physikalisch-chemischen Charakterisierung der neuen Materialien stattfinden sowie elektrochemische Analysen der gesamten Zellen- und Batteriesysteme durchgeführt. Das elektrodynamische Verhalten der neuen Zellen wird u. a. mit Hilfe der elektrochemischen Impedanzspektroskopie analysiert, um präzise und zuverlässige Algorithmen für ein späteres Batteriemonitoring im realen Betrieb zu finden.

Diffusion and advection with sorption of anions, cations and non-polar molecules in organo-clays at varying thermo-chemical conditions - validation by analytical methods and molecular simulation

The sorption of anions in geotechnical multibarrier systems of planned high level waste repositories (HLWR) and of non-ionic and organic pollutants in conventional waste disposals are in the center of recent research. In aquatic systems, persistent radionuclides such as 79Se, 99Tc, 129I exist in a form of anions. There is strongly increasing need to find materials with high sorption capacities for such pollutants. Specific requirements on barrier materials are long-term stability of adsorbent under various conditions such as T > 100 C, varying hydrostatic pressure, and the presence of competing ions. Organo-clays are capable to sorb high amounts of cations, anions and non-polar molecules simultaneously having selectivity for certain ions. This project is proposed to improve the understanding of sorption and desorption processes in organo-clays. Additionally, the modification of material properties under varying chemical and thermal conditions will be determined by performing diffusion and advection experiments. Changes by sorption and diffusion will be analyzed by determining surface charge and contact angles. Molecular simulations on models of organo-clays will be conducted in an accord with experiments with aim to understand and analyze experimental results. The computational part of the project will profit from the collaboration of German partner with the group in Vienna, which has a long standing experience in a modeling of clay minerals.

Natural variation of flowering time due to cis-regulatory evolution of FLOWERING LOCUS T and its orthologs and paralogs in Brassica napus

In many plant species, FLOWERING LOCUS T and related proteins are the mobile signal that communicates information on photoperiod from the leaves to the shoots, where the transition to flowering is realized. FT expression is tightly controlled at the transcriptional level so that it is restricted to leaves, occurs only in appropriate photoperiods, and integrates ambient temperature and developmental cues, as well as information on biotic and abiotic stress. We previously established that FT transcription in the model plant Arabidopsis thaliana requires proximal promoter cis-elements and a distal enhancer, both evolutionary conserved among Brassicacea species. In addition, FT transcription is blocked prior vernalization in biannual accessions and vernalization-dependency of FT is controlled through a CArG-box located in the first intron that binds the transcriptional repressor FLOWERING LOCUS C (FLC). Chromatin-mediated repression by the Polycomb Group (PcG) pathway is required for photoperiod-dependent FT regulation and participates in FT expression level modulation in response to other cues.In this project, I propose to explore the available sequence data from the 1001 genome project in Arabidopsis to evaluate how often changes in regulatory cis-elements at FT have occurred and how these translate into an adaptive value. Allele-specific FT expression pattern will be measured in F1 hybrids of different accessions in response to varying environmental conditions. FT alleles that show cis-regulatory variation will be further analyzed to pinpoint the causal regulatory changes and study their effect in more detail. The allotetrapolyploid species Brassica napus is a hybrid of two Brassiceae species belonging to the A- and C-type genome, which are in turn mesopolyploid due to a genome triplication that occurred ca. 10x106 years ago. We will determine allele-specific expression of FT paralogs from both genomes of a collection of B. napus accessions. The plants will be grown in the field in changing environmental conditions to maximize the chance to detect expression variation of the paralogs. We will compare the contribution of the founder genomes to the regulation of flowering time and asses variation in this contribution. A particular focus will be to study the impact of chromatin-mediated repression on allele selection in B. napus.

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