In many plant species, FLOWERING LOCUS T and related proteins are the mobile signal that communicates information on photoperiod from the leaves to the shoots, where the transition to flowering is realized. FT expression is tightly controlled at the transcriptional level so that it is restricted to leaves, occurs only in appropriate photoperiods, and integrates ambient temperature and developmental cues, as well as information on biotic and abiotic stress. We previously established that FT transcription in the model plant Arabidopsis thaliana requires proximal promoter cis-elements and a distal enhancer, both evolutionary conserved among Brassicacea species. In addition, FT transcription is blocked prior vernalization in biannual accessions and vernalization-dependency of FT is controlled through a CArG-box located in the first intron that binds the transcriptional repressor FLOWERING LOCUS C (FLC). Chromatin-mediated repression by the Polycomb Group (PcG) pathway is required for photoperiod-dependent FT regulation and participates in FT expression level modulation in response to other cues.In this project, I propose to explore the available sequence data from the 1001 genome project in Arabidopsis to evaluate how often changes in regulatory cis-elements at FT have occurred and how these translate into an adaptive value. Allele-specific FT expression pattern will be measured in F1 hybrids of different accessions in response to varying environmental conditions. FT alleles that show cis-regulatory variation will be further analyzed to pinpoint the causal regulatory changes and study their effect in more detail. The allotetrapolyploid species Brassica napus is a hybrid of two Brassiceae species belonging to the A- and C-type genome, which are in turn mesopolyploid due to a genome triplication that occurred ca. 10x106 years ago. We will determine allele-specific expression of FT paralogs from both genomes of a collection of B. napus accessions. The plants will be grown in the field in changing environmental conditions to maximize the chance to detect expression variation of the paralogs. We will compare the contribution of the founder genomes to the regulation of flowering time and asses variation in this contribution. A particular focus will be to study the impact of chromatin-mediated repression on allele selection in B. napus.
Fusarium species of the Gibberella fujikuroi species complex cause serious diseases on different crops such as rice, wheat and maize. An important group of plant pathogens is the Gibberella fujikuroi species complex (GFC) of closely related Fusarium species which are associated with specific hosts; F. verticillioides and F. proliferatum are particularly associated with maize where they can cause serious ear-, root-, and stalk rot diseases. Two other closely related species of the GFC, F. mangiferae and F. fujikuroi, which share about 90Prozent sequence identity with F. verticillioides, are pathogens on mango and rice, respectively. All of these species produce a broad spectrum of secondary metabolites such as phytohormones (gibberellins, auxins, and cytokinins), and harmful mycotoxins, such as fumonisin, fusarin C, or fusaric acid in large quantities. However, the spectrum of those mycotoxins might differ between closely related species suggesting that secondary metabolites might be determinants for host specificity. In this project, we will study the potential impact of secondary metabolites (i.e. phytohormones and certain mycotoxins) and some other species-specific factors (e.g. species-specific transcription factors) on host specificity. The recently sequenced genomes of F. mangiferae and F. fujikuroi by our groups and the planned sequencing of F. proliferatum will help to identify such determinants by genetic manipulation of the appropriate metabolic pathway(s).
Sandy soils of the arid/semiarid dune fields of the Palestinian Gaza Strip and the Israeli western Negev are extensively covered by biological soil crusts (BSC), which stabilize the surface and prevent desertification. Political discussions in Israel suggest transferring a large part of this sand belt to the Gaza Strip within a final peace accord. Inappropriate land uses may lead to destruction of the BSC and initiate desertification, as already occurring in parts of the Gaza Strip. In this interdisciplinary project the influence of environmental factors on the vitality, stability and the recovery potential of the BSC will be investigated in order to evaluate the carrying capacity of this fragile landscape, in relation to rainfall, soil and relief conditions. A transect stretching from the Mediterranean coast in the Palestinian Gaza Strip (370 mm rainfall) to 65 km southwards in Israel ( Nizzana , less than 100 mm rainfall) has been selected. The interactions of molecular biological, physiological, physical and soil chemical processes, expressed in specific characteristics of the BSC and the underlying soil, will be assessed from the molecular to the landscape scale.
In the last decades agricultural policy has gained increasingly in complexity. Nowadays it influences the food and agricultural sector from the global market down to the farm level. Widespread research questions, like the impact of the WTO negotiations on the farm structure, most often require comprehensive modeling frameworks. Thus, different types of models are utilized according to their comparative advantages and combined in a strategically useful way to more accurately represent micro and macro aspects of the food and agricultural sector. Consequently, in recent years we have seen an increase in the development and application of model linkages. Given this background, the overall objective of this subproject is a systematic sensitivity analysis of model linkages that gradually involves more and more characteristics of the linkage and the corresponding transfer of results between models. In addition, the project aims to answer the following specific question: How does structural change at the farm level influence aggregate supply and technical progress? Under which conditions is it possible to derive macro-relationships from micro-relationships? How does the aggregation level influence the model results and how can possible problems be overcome? This procedure is used to quantify the effects and to derive conditions for optimal interaction of the connected models. The analysis is based on the general equilibrium model GTAP (Global Trade Analysis Project) and the farm group model FARMIS (Farm Modelling Information System) which are employed in conjunction to analyze the effects of WTO negotiations on the farm level.
For surface soils, the mechanisms controlling soil organic C turnover have been thoroughly investigated. The database on subsoil C dynamics, however, is scarce, although greater than 50 percent of SOC stocks are stored in deeper soil horizons. The transfer of results obtained from surface soil studies to deeper soil horizons is limited, because soil organic matter (SOM) in deeper soil layers is exposed to contrasting environmental conditions (e.g. more constant temperature and moisture regime, higher CO2 and lower O2 concentrations, increasing N and P limitation to C mineralization with soil depth) and differs in composition compared to SOM of the surface layer, which in turn entails differences in its decomposition. For a quantitative analysis of subsoil SOC dynamics, it is necessary to trace the origins of the soil organic compounds and the pathways of their transformations. Since SOM is composed of various C pools which turn over on different time scales, from hours to millennia, bulk measurements do not reflect the response of specific pools to both transient and long-term change and may significantly underestimate CO2 fluxes. More detailed information can be gained from the fractionation of subsoil SOM into different functional pools in combination with the use of stable and radioactive isotopes. Additionally, soil-respired CO2 isotopic signatures can be used to understand the role of environmental factors on the rate of SOM decomposition and the magnitude and source of CO2 fluxes. The aims of this study are to (i) determine CO2 production and subsoil C mineralization in situ, (ii) investigate the vertical distribution and origin of CO2 in the soil profile using 14CO2 and 13CO2 analyses in the Grinderwald, and to (iii) determine the effect of environmental controls (temperature, oxygen) on subsoil C turnover. We hypothesize that in-situ CO2 production in subsoils is mainly controlled by root distribution and activity and that CO2 produced in deeper soil depth derives to a large part from the mineralization of fresh root derived C inputs. Further, we hypothesize that a large part of the subsoil C is potentially degradable, but is mineralized slower compared with the surface soil due to possible temperature or oxygen limitation.
Chlorinated ethylenes are prevalent groundwater contaminants. Numerous studies have addressed the mechanism of their reductive dehalogenation during biodegradation and reaction with zero-valent iron. However, despite insight with purified enzymes and well-characterized chemical model systems, conclusive evidence has been missing that the same mechanisms do indeed prevail in real-world transformations. While dual kinetic isotope effect measurements can provide such lines of evidence, until now this approach has not been possible for chlorinated ethylenes because an adequate method for continuous flow compound specific chlorine isotope analysis has been missing. This study attempts to close this prevalent research gap by a combination of two complementary approaches. (1) A novel analytical method to measure isotope effects for carbon and chlorine. (2) A carefully chosen set of well-defined model reactants representing distinct dehalogenation mechanisms believed to be important in real-world systems. Isotope trends observed in biotic and abiotic environmental dehalogenation will be compared to these model reactions, and the respective mechanistic hypotheses will be confirmed or discarded. With this hypothesis-driven approach it is our goal to elucidate for the first timdehalogenation reactions.
The energetic efficiency of C4 photosynthesis is strongly affected by bundle sheath leakiness, which is commonly assessed with the 'linear version' of the Farquhar model of 13C discrimination, and leaf gas exchange and 13C composition data. But, the linear Farquhar model is a simplification of the full mechanistic theory of ? in C4 plants, potentially generating errors in the estimation of leakiness. In particular, post-photosynthetic C isotope fractionation could cause large errors, but has not been studied in any detail. The present project aims to improve the understanding of the ecological and developmental/physiological factors controlling discrimination and leakiness of the perennial grass Cleistogenes squarrosa. C. squarrosa is the most important member of the C4 community which has spread significantly in the Mongolia grasslands in the last decades. It has an unusually high and variable discrimination, which suggests very high (and potentially highly variable) leakiness. Specifically, we will conduct the first systematic study of respiratory 13C fractionation in light and dark at leaf- and stand-scale in this C4 species, and assess its effect on discrimination and estimates of leakiness. These experiments are conducted in specialized 13CO2/12CO2 gas exchange mesocosms using ecologically relevant scenarios, testing specific hypotheses on effects of environmental drivers and plant and leaf developmental stage on discrimination and leakiness.
Prehistoric pits are filled with ancient topsoil material, which has been preserved there over millennia. A characteristic of these pit fillings is that their colour is different depending on the time the soil material was relocated. Soil colour is the result of soil forming processes and soil properties, and it could therefore indicate the soil characteristics present during that specific period. To the best of our knowledge, no investigation analysed and explained the reasons for these soil colour changes over time. The proposed project will investigate soil parameters from pit fillings of different archaeological periods in the loess area of the Lower Rhine Basin (NW-Germany). It aims to implement the measurement of colour spectra as a novel analytical tool for the rapid analyses of a high number of soil samples: the main goal is to relate highresolution colour data measured by a spectrophotometer to soil parameters that were analysed by conventional pedogenic methods and by mid infrared spectroscopy (MIRS), with a main focus on charred organic matter (BPCAs). This tool would enable us to quantify the variation of soil properties over a timescale of several millennia, during different prehistoric periods at regional scale and for loess soils in general. Detailed information concerning changing soil properties on a regional scale is necessary to determine past soil quality and it helps to increase our understanding of prehistoric soil cultivation practices. Furthermore, these information could also help to increase our understanding about agricultural systems in different archaeological periods.
Über dem Nordatlantik und Europa wird die Variabilität der großräumigen Wetterbedingungen von quasistationären, langandauernden und immer wiederkehrenden Strömungsmustern â€Ì sogenannten Wetterregimen â€Ì geprägt. Diese zeichnen sich durch das Auftreten von Hoch- und Tiefdruckgebieten in bestimmten Regionen aus. Verlässliche Wettervorhersagen auf Zeitskalen von einigen Tagen bis zu einigen Monaten im Voraus hängen von einer korrekten Darstellung der Lebenszyklen dieser Strömungsregime in Computermodellen ab. Um das zu erreichen müssen insbesondere Prozesse, die günstige Bedingungen zur Intensivierung von Tiefdruckgebieten aufrecht erhalten, und Prozesse, die den Aufbau von stationären Hochdruckgebieten (blockierende Hochs) begünstigen, richtig wiedergegeben werden. Aktuelle Forschung deutet stark darauf hin, dass Atmosphäre-Ozean Wechselwirkungen, insbesondere entlang des Golfstroms, latente Wärmefreisetzung in Tiefs, und Kaltluftausbrüche aus der Arktis dabei eine entscheidende Rolle spielen. Dennoch mangelt es an grundlegendem Verständnis wie solche Luftmassentransformationen über dem Ozean die großskalige Höhenströmung beeinflussen. Darüber hinaus ist die Relevanz solcher Prozesse für Lebenszyklen von Wetterregimen unerforscht. In dieser anspruchsvollen drei-jährigen Kollaboration zwischen KIT und ETH Zürich streben wir an ein ganzheitliches Verständnis zu entwickeln, wie Wärmeaustausch zwischen Ozean und Atmosphäre und diabatische Prozesse in der Golfstromregion die Variabilität der großräumigen Strömung über dem Nordatlantik und Europa prägen. Zu diesem Zweck werden wir ausgefeilte Diagnostiken zur Charakterisierung von Luftmassen mit neuartigen Diagnostiken zur Bestimmung des atmosphärischen Energiehaushaltes verbinden und damit den Ablauf von Wetterregimen und Regimewechseln in aktuellen hochaufgelösten numerischen Modelldatensätzen und mit Hilfe von eigenen Sensitivitätsstudien untersuchen. Dazu werden wir unsere Expertise in größräumiger Dynamik und Wettersystemen, sowie Atmosphäre-Ozean Wechselwirkungen â€Ì insbesondere während arktischen Kaltluftausbrüchen â€Ì und der Lagrangeâ€Ìschen Untersuchung atmosphärischer Prozesse nutzen. Im Detail werden wir (i) ein dynamisches Verständnis entwickeln, wie Luftmassentransformationen entlang des Golfstroms die Höhenströmung über Europa beeinflussen, mit Fokus auf blockierenden Hochdruckgebieten, (ii) die Bedeutung von Luftmassentransformationen und diabatischer Prozesse für den Erhalt von Bedingungen, die die Intensivierung von Tiefdruckgebieten während bestimmter Wetterregimelebenszyklen bestimmen, untersuchen, (iii) diese Erkenntnisse in ein einheitliches und quantitatives Bild vereinen, welches die Prozesse, die den Einfluss des Golfstroms auf die großräumige Wettervariabilität prägen, zusammenfasst und (iv) die Güte dieser Prozesse in aktuellen numerischen Vorhersagesystemen bewerten. Diese Grundlagenforschung wird wichtige Erkenntnisse zur Verbesserung von Wettervorhersagemodellen liefern.
The biogeochemical interface (BGI) in this project is defined as the organo-mineral surface of soil particles colonized by microorganisms. In the preceding project it was demonstrated that the different soil particle size fractions were associated with specifically structured microbial communities, a characteristic amount of soil organic carbon, and a specific capacity for adsorption of the organic chemicals phenol and 2,4-dichlorophenol, respectively. While the diversity of the microbial community was responsive to fertilization-determined additional organic soil carbon in the larger particle size fractions, it was unaffected in clay. Stable isotope probing with 13C-labelled phenol and 2,4-dichlorophenol revealed that the soil organic carbon in the BGIs also affected the diversity of microorganisms involved in the degradation of these chemicals. All these results are yet only based on studying one soil with three organic carbon variants (Bad Lauchstädt) and only two organic compounds. The objective of this 2nd phase project is to apply the innovative technology developed in the 1st phase for studying the BGI processes with soil organic carbon variants from another soil (Ultuna, SPP 1315 site) and with the chiralic anilide Fungicide metalaxyl as an additional compound. This 2nd phase SPP 1315 project will also, in a collaborative effort with two other SPP 1315 partners, investigate (1) the importance of BGIs for the entantio-selective degradation of metalaxyl and (2) the role of soil microorganisms in the formation of bound residues, respectively. Furthermore, the project will utilize stable isotope probing and next-generation DNA sequencing to link the structural and functional diversity of the microbial communities responsible for metabolism of organic chemicals in the different BGIs determined by particle size fractions and soil organic carbon variants.
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